ID Q5CAI4_ORYSJ Unreviewed; 598 AA.
AC Q5CAI4;
DT 12-APR-2005, integrated into UniProtKB/TrEMBL.
DT 12-APR-2005, sequence version 1.
DT 27-MAR-2024, entry version 68.
DE SubName: Full=OSJNBa0032N05.14 protein {ECO:0000313|EMBL:CAE05586.1};
GN ORFNames=OSJNBa0032N05.14 {ECO:0000313|EMBL:CAE05586.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:CAE05586.1};
RN [1] {ECO:0000313|EMBL:CAE05586.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
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DR EMBL; AL731594; CAE05586.1; -; Genomic_DNA.
DR AlphaFoldDB; Q5CAI4; -.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR CDD; cd00303; retropepsin_like; 1.
DR CDD; cd09279; RNase_HI_like; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR PANTHER; PTHR24559:SF437; RIBONUCLEASE H; 1.
DR PANTHER; PTHR24559; TRANSPOSON TY3-I GAG-POL POLYPROTEIN; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF13456; RVT_3; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
PE 4: Predicted;
KW DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723}.
FT DOMAIN 296..434
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|Pfam:PF00078"
FT DOMAIN 510..596
FT /note="RNase H type-1"
FT /evidence="ECO:0000259|Pfam:PF13456"
SQ SEQUENCE 598 AA; 66014 MW; BCB6A7AB4F813B6A CRC64;
MTWRKFRTDR AGKAVKAVEE VQALRMEFDG QQAGSHQQPI RKKKKMQLRM VHNITSTGEG
APRYLNQQIS FGPDDAEGVL FPHQDPLIIL AEIVGFEVRR ILVDGGSSAD VIIAEAYARM
GLPTLALTQA PTSLQGFGGE AVQVLGQVQL AVAFGTSDNR REEQILFDVV DIPYNYNTIF
GRATLNKFKA ISHHNYLKLK MPGLAGVIMV KGLQPSATSK GDLAAINRAV HNVEAEPHVR
AKHIPKPASH GKVIKVQVDD ADPTRFVSLR GNMGEKEAES ILEIDHPKWL ANPVLVRKSN
GKWRMCVDFT DLNKACPKDD FLLPRIDQLV DLTAGCELTS FLDAYSGYHQ IHMNPADIPK
TAFITPFGTF CHLRMPFGLR NAGATFASLV YKVLYKQLGR NVETYVDDIV VESHKAFDHA
SDIQETFDNI RSAGPQSHCA ITVYFGRSAP GQGNYWPAQQ VGGGIISLRP AFCRPHCHQV
PSPSSLRGRM DTGVRPRNRA HRITLGMYSD GSWSHKGAVA AVVLTSLGGV PIRYAARLQF
DTTNNTAKYK AVLLGLRKAK ALGVRRLLIR TDSKLVASQV DKSFEAKDEG MKRYLEAV
//
