ID Q5DUF0_9VIRU Unreviewed; 239 AA.
AC Q5DUF0;
DT 29-MAR-2005, integrated into UniProtKB/TrEMBL.
DT 29-MAR-2005, sequence version 1.
DT 27-MAR-2024, entry version 41.
DE RecName: Full=Capsid protein {ECO:0000256|ARBA:ARBA00018091};
GN Name=CP {ECO:0000313|EMBL:CAI56720.1};
GN Synonyms=ORF4 {ECO:0000313|EMBL:CBA11913.1};
OS Rice yellow mottle virus.
OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
OC Sobelivirales; Solemoviridae; Sobemovirus.
OX NCBI_TaxID=31744 {ECO:0000313|EMBL:CAI56720.1};
RN [1] {ECO:0000313|EMBL:CAI56720.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=RY04 Kla {ECO:0000313|EMBL:CAI56720.1};
RX PubMed=15230480;
RA Banwo O.O., Winter S., Koerbler M., Abdallah R.S., Makundi R.H.;
RT "Molecular variability and distribution of Rice yellow mottle virus in
RT Tanzania.";
RL Acta Virol. 48:69-71(2004).
RN [2] {ECO:0000313|EMBL:CAI56720.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=RY04 Kla {ECO:0000313|EMBL:CAI56720.1};
RA Winter S.;
RL Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:CAP62457.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Tz204 {ECO:0000313|EMBL:CAP62457.1};
RA Fargette D.;
RT "Rice yellow mottle virus, an RNA plant virus, evolves as rapidly as most
RT RNA animal viruses.";
RL Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:CBA11913.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Tz225 {ECO:0000313|EMBL:CBA11913.1}, Tz226
RC {ECO:0000313|EMBL:CBA11914.1}, Tz228 {ECO:0000313|EMBL:CBA11916.1},
RC and Tz231 {ECO:0000313|EMBL:CBA11918.1};
RA Fargette D.;
RL Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|EMBL:CBA11913.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Tz225 {ECO:0000313|EMBL:CBA11913.1}, Tz226
RC {ECO:0000313|EMBL:CBA11914.1}, Tz228 {ECO:0000313|EMBL:CBA11916.1},
RC and Tz231 {ECO:0000313|EMBL:CBA11918.1};
RA Pinel-Galzi A., Mpunami A., Sangu E., Rakotomalala M.;
RT "Recombination, selection and clock-like evolution of Rice yellow mottle
RT virus.";
RL Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the icosahedral plant coat protein family.
CC {ECO:0000256|ARBA:ARBA00007446}.
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DR EMBL; AJ884690; CAI56720.1; -; Genomic_RNA.
DR EMBL; AM931223; CAP62457.1; -; Genomic_RNA.
DR EMBL; FN432873; CBA11913.1; -; Genomic_RNA.
DR EMBL; FN432874; CBA11914.1; -; Genomic_RNA.
DR EMBL; FN432876; CBA11916.1; -; Genomic_RNA.
DR EMBL; FN432878; CBA11918.1; -; Genomic_RNA.
DR GO; GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR Gene3D; 2.60.120.20; -; 1.
DR InterPro; IPR000937; Capsid_prot_S-dom_vir.
DR InterPro; IPR029053; Viral_coat.
DR Pfam; PF00729; Viral_coat; 1.
DR SUPFAM; SSF88633; Positive stranded ssRNA viruses; 1.
DR PROSITE; PS00555; ICOSAH_VIR_COAT_S; 1.
PE 3: Inferred from homology;
KW Capsid protein {ECO:0000313|EMBL:CAI56720.1};
KW Virion {ECO:0000313|EMBL:CAI56720.1}.
FT DOMAIN 35..182
FT /note="Icosahedral viral capsid protein S"
FT /evidence="ECO:0000259|Pfam:PF00729"
FT REGION 1..49
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..16
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 239 AA; 25983 MW; 8B2FA7C651BE435B CRC64;
MARKGKKTNS NQGQQGKKKS RRPRGRSAEP QLQRAPVAQA SRISGTVPGP LSSNTWPVHS
VEFLMDFKRS ATSADATTFN CVPFNLPRVW NLARCYSMWK PTRWDVVYLP EVSAATAGSI
EMCYLYDYAD AVPSDTGKMS RTAGFVTSSV WYGAEGCHLL SGGAARNAVV ASMDCSRVGW
KRVTSSIPDS VDPNVVNTIL PARLAVRSSI KPTVDDVPGK LYVIVGMVLR DPVDPTLNT
//
