ID Q5LNQ3_RUEPO Unreviewed; 305 AA.
AC Q5LNQ3;
DT 01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT 01-FEB-2005, sequence version 1.
DT 27-MAR-2024, entry version 114.
DE SubName: Full=Transcriptional regulator, AraC family {ECO:0000313|EMBL:AAV96385.1};
GN OrderedLocusNames=SPO3150 {ECO:0000313|EMBL:AAV96385.1};
OS Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter
OS pomeroyi).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Roseobacteraceae; Ruegeria.
OX NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV96385.1, ECO:0000313|Proteomes:UP000001023};
RN [1] {ECO:0000313|EMBL:AAV96385.1, ECO:0000313|Proteomes:UP000001023}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC {ECO:0000313|Proteomes:UP000001023};
RX PubMed=15602564; DOI=10.1038/nature03170;
RA Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E., Sheldon W.M.,
RA Ye W., Miller T.R., Carlton J., Rasko D.A., Paulsen I.T., Ren Q.,
RA Daugherty S.C., Deboy R.T., Dodson R.J., Durkin A.S., Madupu R.,
RA Nelson W.C., Sullivan S.A., Rosovitz M.J., Haft D.H., Selengut J., Ward N.;
RT "Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine
RT environment.";
RL Nature 432:910-913(2004).
RN [2] {ECO:0000313|EMBL:AAV96385.1, ECO:0000313|Proteomes:UP000001023}
RP GENOME REANNOTATION.
RC STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC {ECO:0000313|Proteomes:UP000001023};
RX PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA Rivers A.R., Smith C.B., Moran M.A.;
RT "An updated genome annotation for the model marine bacterium Ruegeria
RT pomeroyi DSS-3.";
RL Stand. Genomic Sci. 9:11-11(2014).
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DR EMBL; CP000031; AAV96385.1; -; Genomic_DNA.
DR RefSeq; WP_011048840.1; NC_003911.12.
DR AlphaFoldDB; Q5LNQ3; -.
DR STRING; 246200.SPO3150; -.
DR PaxDb; 246200-SPO3150; -.
DR KEGG; sil:SPO3150; -.
DR eggNOG; COG4977; Bacteria.
DR HOGENOM; CLU_000445_59_0_5; -.
DR OrthoDB; 186587at2; -.
DR Proteomes; UP000001023; Chromosome.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR CDD; cd03138; GATase1_AraC_2; 1.
DR Gene3D; 3.40.50.880; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR InterPro; IPR029062; Class_I_gatase-like.
DR InterPro; IPR002818; DJ-1/PfpI.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR018060; HTH_AraC.
DR PANTHER; PTHR43130; ARAC-FAMILY TRANSCRIPTIONAL REGULATOR; 1.
DR PANTHER; PTHR43130:SF3; THIJ_PFPI FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14240); 1.
DR Pfam; PF01965; DJ-1_PfpI; 1.
DR Pfam; PF12833; HTH_18; 1.
DR SMART; SM00342; HTH_ARAC; 1.
DR SUPFAM; SSF52317; Class I glutamine amidotransferase-like; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS01124; HTH_ARAC_FAMILY_2; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000001023}.
FT DOMAIN 208..305
FT /note="HTH araC/xylS-type"
FT /evidence="ECO:0000259|PROSITE:PS01124"
SQ SEQUENCE 305 AA; 32781 MW; ECDFB616E97140BA CRC64;
MDVLLLHPTP CQRSSLAIAE DMLDSANRVA ALRGEAAPFR WRTLRPEAVG PGTPAPGLVV
LPGLGLASAH DLRAAMDSPA FATLSAALRH LAQPGTRIAG ACTGVFALAA AGLLDGRRAT
TTWWLAPLLR AWFPKVRVEM GEVLYSDGAL VTAGASFAQI DLMLHLIETQ AGYALAEDCR
RFLLADSRPS QLPYLSVATL VAGDPALQRA ELHLRRHIAR QVPLAELAEA AGLGARTFAR
RLARVAGMTP GEFAQTLRVT EAIRLYRAGG LSLEQIAHRV GYGDATALRR VMTRRTGRRL
ESFRT
//
