ID Q6BFC7_PARTE Unreviewed; 277 AA.
AC Q6BFC7;
DT 16-AUG-2004, integrated into UniProtKB/TrEMBL.
DT 16-AUG-2004, sequence version 1.
DT 27-MAR-2024, entry version 99.
DE SubName: Full=Chromosome undetermined scaffold_1, whole genome shotgun sequence {ECO:0000313|EMBL:CAK55587.1};
DE SubName: Full=DNA ligase, putative {ECO:0000313|EMBL:CAH03644.1};
GN ORFNames=GSPATT00000022001 {ECO:0000313|EMBL:CAK55587.1}, PTMB.443c
GN {ECO:0000313|EMBL:CAH03644.1};
OS Paramecium tetraurelia.
OC Eukaryota; Sar; Alveolata; Ciliophora; Intramacronucleata;
OC Oligohymenophorea; Peniculida; Parameciidae; Paramecium.
OX NCBI_TaxID=5888 {ECO:0000313|EMBL:CAH03644.1, ECO:0000313|Proteomes:UP000000600};
RN [1] {ECO:0000313|EMBL:CAH03644.1, ECO:0000313|Proteomes:UP000000600}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Stock d4-2 {ECO:0000313|EMBL:CAH03644.1,
RC ECO:0000313|Proteomes:UP000000600};
RX PubMed=15296759; DOI=10.1016/j.cub.2004.07.029;
RA Zagulski M., Nowak J.K., Le Mouel A., Nowacki M., Migdalski A.,
RA Gromadka R., Noel B., Blanc I., Dessen P., Wincker P., Keller A.M.,
RA Cohen J., Meyer E., Sperling L.;
RT "High coding density on the largest Paramecium tetraurelia somatic
RT chromosome.";
RL Curr. Biol. 14:1397-1404(2004).
RN [2] {ECO:0000313|EMBL:CAK55587.1, ECO:0000313|Proteomes:UP000000600}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Stock d4-2 {ECO:0000313|EMBL:CAK55587.1,
RC ECO:0000313|Proteomes:UP000000600};
RX PubMed=17086204; DOI=10.1038/nature05230;
RG Genoscope;
RA Aury J.-M., Jaillon O., Duret L., Noel B., Jubin C., Porcel B.M.,
RA Segurens B., Daubin V., Anthouard V., Aiach N., Arnaiz O., Billaut A.,
RA Beisson J., Blanc I., Bouhouche K., Camara F., Duharcourt S., Guigo R.,
RA Gogendeau D., Katinka M., Keller A.-M., Kissmehl R., Klotz C., Koll F.,
RA Le Moue A., Lepere C., Malinsky S., Nowacki M., Nowak J.K., Plattner H.,
RA Poulain J., Ruiz F., Serrano V., Zagulski M., Dessen P., Betermier M.,
RA Weissenbach J., Scarpelli C., Schachter V., Sperling L., Meyer E.,
RA Cohen J., Wincker P.;
RT "Global trends of whole-genome duplications revealed by the ciliate
RT Paramecium tetraurelia.";
RL Nature 444:171-178(2006).
RN [3] {ECO:0000313|EMBL:CAK55587.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Stock d4-2 {ECO:0000313|EMBL:CAK55587.1};
RG Genoscope;
RL Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:CAH03644.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Stock d4-2 {ECO:0000313|EMBL:CAH03644.1};
RA Nowak J.K., Migdalski A., Gromadka R., Zagulski M.;
RT "Paramecium megabase sequencing project.";
RL Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- COFACTOR:
CC Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240;
CC Evidence={ECO:0000256|ARBA:ARBA00001968};
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DR EMBL; CR548612; CAH03644.1; -; Genomic_DNA.
DR EMBL; CT867985; CAK55587.1; -; Genomic_DNA.
DR RefSeq; XP_001347270.1; XM_001347234.1.
DR RefSeq; XP_001422985.1; XM_001422948.1.
DR AlphaFoldDB; Q6BFC7; -.
DR STRING; 5888.Q6BFC7; -.
DR EnsemblProtists; CAK55587; CAK55587; GSPATT00000022001.
DR GeneID; 5008772; -.
DR GeneID; 79573759; -.
DR KEGG; ptm:GSPATT00000022001; -.
DR KEGG; ptm:PTMB.443c; -.
DR eggNOG; ENOG502QTYC; Eukaryota.
DR HOGENOM; CLU_021047_0_0_1; -.
DR InParanoid; Q6BFC7; -.
DR OMA; GICEEMV; -.
DR Proteomes; UP000000600; Chromosome.
DR Proteomes; UP000000600; Partially assembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:InterPro.
DR GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
DR CDD; cd07896; Adenylation_kDNA_ligase_like; 1.
DR CDD; cd08041; OBF_kDNA_ligase_like; 1.
DR Gene3D; 3.30.1490.70; -; 1.
DR Gene3D; 3.30.470.30; DNA ligase/mRNA capping enzyme; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR InterPro; IPR029319; DNA_ligase_OB.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR PANTHER; PTHR47810; DNA LIGASE; 1.
DR PANTHER; PTHR47810:SF1; DNA LIGASE B; 1.
DR Pfam; PF01068; DNA_ligase_A_M; 1.
DR Pfam; PF14743; DNA_ligase_OB_2; 1.
DR SUPFAM; SSF56091; DNA ligase/mRNA capping enzyme, catalytic domain; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE 4: Predicted;
KW DNA replication {ECO:0000256|ARBA:ARBA00022705};
KW Ligase {ECO:0000313|EMBL:CAH03644.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000000600}.
FT DOMAIN 116..204
FT /note="ATP-dependent DNA ligase family profile"
FT /evidence="ECO:0000259|PROSITE:PS50160"
SQ SEQUENCE 277 AA; 31661 MW; E06DB97F7BF0F108 CRC64;
MRPNLGENLG LGPTFSKSQR ISCLLASNWA VSIDPKGYYM SEKLDGMRMI WTGMEMFTRN
GYSLKFPSYF IEGWPTTYLD GELWINRGTF NKVLTSVRKR TADPNAWKII KYMVFDAPFL
QEPFSDRYAK LKKAIEKIKN PHLVYVPHKI CRGKEHLAEE LAEVQNIGGE GLMLRDPDAL
YDGIRSKSLL KVKSSLDAEA VIIDYVQDTH MKKENVLGGF LVRNDEGQEF EVGLGLKIGI
KKQRPPIGTK ITYKYCGLAE NGYPKFPEFV RIYPEDI
//
