ID Q6L974_VITVI Unreviewed; 1027 AA.
AC Q6L974;
DT 05-JUL-2004, integrated into UniProtKB/TrEMBL.
DT 05-JUL-2004, sequence version 1.
DT 27-MAR-2024, entry version 76.
DE SubName: Full=GAG-POL {ECO:0000313|EMBL:BAD18986.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:BAD18986.1};
RN [1] {ECO:0000313|EMBL:BAD18986.1}
RP NUCLEOTIDE SEQUENCE.
RA Kobayashi S., Goto-Yamamoto N., Hirochika H.;
RT "Retrotransposon-induced mutations in grape skin color.";
RL Science 304:982-982(2004).
RN [2] {ECO:0000313|EMBL:BAE96746.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=16794336; DOI=10.1271/bbb.50647;
RA Yakushiji H., Kobayashi S., Goto-Yamamoto N., Jeong S.T., Sueta T.,
RA Mitani N., Azuma A.;
RT "A skin color mutation of grapevine, from black-skinned Pinot Noir to
RT white-skinned Pinot Blanc, is caused by deletion of the functional VvmybA1
RT allele.";
RL Biosci. Biotechnol. Biochem. 70:1506-1508(2006).
RN [3] {ECO:0000313|EMBL:BAH15077.1}
RP NUCLEOTIDE SEQUENCE.
RA Azuma A., Kobayashi S., Goto-Yamamoto N., Shiraishi M., Mitani N.,
RA Yakushiji H., Koshita Y.;
RT "Color recovery in berries of grape (Vitis vinifera L.) 'Benitaka', a bud
RT sport of 'Italia', is caused by a novel allele at the VvmybA1 locus.";
RL Plant Sci. 176:470-478(2009).
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DR EMBL; AB111100; BAD18986.1; -; Genomic_DNA.
DR EMBL; AB242300; BAE96746.1; -; Genomic_DNA.
DR EMBL; AB242301; BAE96749.1; -; Genomic_DNA.
DR EMBL; AB442010; BAH15077.1; -; Genomic_DNA.
DR AlphaFoldDB; Q6L974; -.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd09279; RNase_HI_like; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 2.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041577; RT_RNaseH_2.
DR PANTHER; PTHR37984:SF7; INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR37984; PROTEIN CBG26694; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF17919; RT_RNaseH_2; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF13456; RVT_3; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 2.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50879; RNASE_H_1; 1.
DR PROSITE; PS50878; RT_POL; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723}.
FT DOMAIN 46..225
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT DOMAIN 450..579
FT /note="RNase H type-1"
FT /evidence="ECO:0000259|PROSITE:PS50879"
FT DOMAIN 739..898
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
SQ SEQUENCE 1027 AA; 116599 MW; C6AFC9DCD2D828D8 CRC64;
MKGIHPSITS HRLNVVSTAR PVRQRIRRFH PDRQRVIRNE IDKLLEAGFI REVSYPDWLA
NVVVVPKKEG KWRVCVDYTN LNNACPKDSF PLPRIDQIVD STSGQGMLSF LDAFSGYHQI
PMSPDDEEKI AFITPHDLYC YKVMPFGLKN AGATYQRLMT KIFKPLIGHS VEVYIDDIVV
KSKTREQHIL HLQEVFYLLR RYGMKLNPSK CAFGVSARKF LGFMVSQRGI EVSPDQVKAV
METPPPRNKK ELQRLTGKLV ALGRFIARFI DELRPFFLAI RKAGTHGWTD NCQNALERIK
HYLMQPPILS SPIPKEKLYM YLAVSEWAIS AVLFRCPSPK EQKPIYYVSR ALADVETRYS
KMELISLALR SAAQKLRPYF QAHPVIVLTD QPLRNILHKP DLTGRMLQWA IELSEFGIEF
QPRLSMKGQV MADFVLEYSR KPGQHEGSRK KEWWTLRVDG ASRSSGSGVG LLLQSPTGEH
LEQAIRLGFS ASNNEAEYEA ILSGLDLALA LSVSKLRIFS DSQLVVKHVQ EEYEAKDARM
ARYLAKVRNT LQQFTEWTIE KIKRADNRRA DALAGIAASL SIKEAILLPI HVQTNPSVSE
ISICSTTEAP QADDQEWMND ITEYIRTGTL PGDPKQAHKV RVQAARFTLI GGHLYKRSFT
GPYLRCLGHS EAQYVLAELH EGIYGNHSGG RSLAHRAHSQ GYYWPTMKKE AAAYVKRCDK
CQRYAPIPHM PSTTLKSISG PWPFAQWGMD IVRPLPTAPA QKKFLLVATD YFSKWVEAEA
YASTKDKDVT KFVWKNIICR FGIPQTIIAD NGPQFDSIAF RNFCSELNIR NSYSTPRYPQ
SNGQAEATNK TLITALKKRL EQAKGKWVEE LPGVLWAYRT TPGRPTGNTP FALAYGMDAV
IPIEIGLPTI WTNAAKQSDA NMQLGRNLDW TDEVRESASI RMADYQQRAS AHYNRKVRPR
SLKNGTLVLR KFFENTTEVG AGKFQANWEG PYIVSKASDN GAYHLQKLDG TPLLRPWNVS
NLKQYYQ
//
