ID Q75HH6_ORYSJ Unreviewed; 1312 AA.
AC Q75HH6;
DT 05-JUL-2004, integrated into UniProtKB/TrEMBL.
DT 05-JUL-2004, sequence version 1.
DT 27-MAR-2024, entry version 118.
DE SubName: Full=Retrotransposon protein, putative, Ty3-gypsy subclass {ECO:0000313|EMBL:ABF99511.1};
GN OrderedLocusNames=LOC_Os03g59810 {ECO:0000313|EMBL:ABF99511.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:ABF99511.1};
RN [1] {ECO:0000313|EMBL:ABF99511.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG Rice Chromosome 3 Sequencing Consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S., Luo M.,
RA Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G.,
RA Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2] {ECO:0000313|EMBL:ABF99511.1}
RP NUCLEOTIDE SEQUENCE.
RA Buell R., Wing R.A., McCombie W.A., Ouyang S.;
RL Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; DP000009; ABF99511.1; -; Genomic_DNA.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 2.40.50.40; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR005162; Retrotrans_gag_dom.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041373; RT_RNaseH.
DR InterPro; IPR041577; RT_RNaseH_2.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR24559:SF434; RNA-DIRECTED DNA POLYMERASE HOMOLOG; 1.
DR PANTHER; PTHR24559; TRANSPOSON TY3-I GAG-POL POLYPROTEIN; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF03732; Retrotrans_gag; 1.
DR Pfam; PF17917; RT_RNaseH; 1.
DR Pfam; PF17919; RT_RNaseH_2; 1.
DR Pfam; PF08284; RVP_2; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50013; CHROMO_2; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50878; RT_POL; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 291..305
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 481..660
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT DOMAIN 935..1115
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT DOMAIN 1267..1312
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
FT REGION 236..260
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 871..898
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 240..260
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1312 AA; 151288 MW; 9740D3FA910BC6DE CRC64;
MASRRRASTS NEETQTPDLT TLAGVMATQT QLLQAIANNQ GNRGGSSFGE FMRTKPPTFT
TAEEPMDAED WLRIIEKKLT LVRVREADKV IFAANQLEGP AGDWWDTYKE AREEDAGEPN
WEEFTTAFRD NFVPAAVMRM KKNEFRRLRQ GNTTIQEYLN RFTQLARYAT GDLADGEEKI
DKFIEGLNDE LRGPMIGQDH DSFQSLINKV VRLENDRKVV EHNRKRRLAM NRLPQVAPQR
PKGATSSEWK PTVVTTNRPA TSSNFLRPVT IQNRAPAPHQ ATTGSVRPGS CFNCGEYGHF
ANKCPHPNKT PIRTGANATA IHGTTTPAAG RGLFRTPQTN RTATGFGRGQ VNHVRAEEAQ
EDQGVLMGMD WLTKNRGVID CRRREVTLTT PWGSDMRATM DQDPRLTERA GGIFTMLPLK
GMPIVQRFPD VFPEDLPGMP PDRDIEFIID LIPETAPISK RPYRMPVNDL EELKKQIREL
QEKEFVRPSS SPWGAPVLFV KKKDGSMRMC VDYRSLNEVT IKNKYPLPRI DDLFDQLKGA
KVFSKIDLRS GYHQLKIRIA DIPKTAFSTR YGLYEFTVMS FGLTNAPAYF MNLMNKVFVD
YLDKFVVVFI DDILIYSKDE EEHAEHLRLV LEKLRKHKLY AKFSKCEFWL KEVAFLGHVI
SAGGVAVDPA KVEAVTEWKA PKSVTEIRSF LGLAGYYRRF IEGFSKIARP MTQLLKKEKK
FVWSEQCQES FEQLKEKLTS APILVLPDIR KDFVIYCNAS RQGLGGIWRH YLIGNHCDIY
TDHKSLKYIF TQSDLNLRQR RWLELIKDYD LEVHYHPGKA NVVADALSRK RHCNHLRMEG
MVPKLREEIA QLNLHIVPRG QINTLDIQPL LRTQIEEAQK DNEEIREVKE RLAAGRAKEF
STDEKDVLWY KKRIYVPEQG GLRGLILKEA HESAYSLHPG STKMYQDLKE GYWWPNMKRD
VAEYVALCDV CQKTATGYDS IWVIVDRLTK TARFIPVKTN YSSAKLAELY MTRIVCLHGV
PKKIISDRGT QFTSHFWEKV HEALGSYLAF STAYHPQTDG QTERTNQVLE DMLRACALDF
SKDWERCLPY AEFSYNNSFQ ASLKMSPNEA LFGRRCRTTL MWSKTGERAV FGPDIIQEAE
EKVRLIRDRL KVAQSRQKSY ADTRRRNLEF KEGSYVYLKV SPMRGTKRFK VKGKLAPRYV
GPFQIVARRG EVAYQLQLPE NIADVHPVFH VSQLKKCLRV PEEQAPLEEI HISNDLTYPE
HPIRILDEAE KRTKSKVWRM YKVQWSNHTK DEATWESEEF LRTEYPHLFE NW
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