ID Q7XDF3_ORYSJ Unreviewed; 879 AA.
AC Q7XDF3;
DT 01-OCT-2003, integrated into UniProtKB/TrEMBL.
DT 22-AUG-2006, sequence version 2.
DT 27-MAR-2024, entry version 79.
DE SubName: Full=Retrotransposon protein, putative, Ty1-copia subclass {ECO:0000313|EMBL:AAP54258.2};
GN OrderedLocusNames=LOC_Os10g33560 {ECO:0000313|EMBL:AAP54258.2};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:AAP54258.2};
RN [1] {ECO:0000313|EMBL:AAP54258.2}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=12791992; DOI=10.1126/science.1083523;
RG Rice Chromosome 10 Sequencing Consortium;
RT "In-depth view of structure, activity, and evolution of rice chromosome
RT 10.";
RL Science 300:1566-1569(2003).
RN [2] {ECO:0000313|EMBL:AAP54258.2}
RP NUCLEOTIDE SEQUENCE.
RA Buell C.R., Wing R.A., McCombie W.R., Messing J., Yuan Q., Ouyang S.;
RL Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AAP54258.2}
RP NUCLEOTIDE SEQUENCE.
RA Buell R.;
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; DP000086; AAP54258.2; -; Genomic_DNA.
DR AlphaFoldDB; Q7XDF3; -.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd09272; RNase_HI_RT_Ty1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR013103; RVT_2.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR45895; INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED; 1.
DR PANTHER; PTHR45895:SF117; RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON TNT 1-94; 1.
DR Pfam; PF14223; Retrotran_gag_2; 1.
DR Pfam; PF07727; RVT_2; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
PE 4: Predicted;
FT DOMAIN 359..502
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 162..187
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 474..501
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 170..187
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 477..497
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 879 AA; 98871 MW; 3ACE081F1F3A7BED CRC64;
MKFFWVSTGK PMGVLNADQQ KEFDEATTLF VGCILSVLGD RLVEVYMHMT DAKELWDALN
TKFGATDASN DLYIMEQFHD YKMADNRSVV EQAHEIQTMA KEFELLKCVL PDKFVDGCII
AKLPPSWRGF GTALKHKRQE YSVEGLIASL DVEEKAREKD VAFKGDGGQS TANVVHTAQN
KSKGKYKAQQ TTNFKKKNNN NNPNQDERTC FVCQPGHLAR KCPPAGQTSK SANVTIGNTG
DGSGYGANVS RGSTVLMGNG SHASVHGVGM VDLKFTSGKI VQLKNVQHVP SIDRNLVSGS
RLTRDGFKLV FESNKVVVSK HGYFIGKGYE CGGLFRFSLS DFCNKSVNHM AVWMMRLIFY
YVYLLKTKDE ALDYFKIYKA EVENQLDRKI KRLRSDRGGE FFSNEFDLFC EEHGIIHERT
PPYSPESNGI AERKNRTLTD LSRDATFFES FFLMKDTHSS SSQPSEIILS SITPPKQTEH
AHEHVTEEDD SEVPRRSKSQ MTAKSFGDDF IVYLVDDTPK SISEAYASPD ADYWKEAVRS
EMDSIVANGT WEVTERPYRC KCVGCKWVFK KKLRPDASHG LLVHQMDVKT TFLNGELDEE
IYTDQPDGFV VEGQEGFAVN EADKCVYYRH GGGEGVILCL YVDDILIFET NLEVINEVKS
FLSQNFDMKD LGVADVILNI KLIRGENGIT LLQSHYVEKI LNRFGYIDSK PSPTPYDPSL
LLRKNKRIAR NQLEYSQIIG SLMYLASATR SDISFAVSKL SWFTSNPGDD HWCALERVMR
YLKGTMELGL HYSGYPAVLE GYSDSNWITD VDEIKATSGY VFTLGGGAVS WRSCKQTILT
RSTMEAELTA LDTATVEAEW LRDLLMDLPI VKKPVPVSL
//
