ID Q88I49_PSEPK Unreviewed; 288 AA.
AC Q88I49;
DT 01-JUN-2003, integrated into UniProtKB/TrEMBL.
DT 01-JUN-2003, sequence version 1.
DT 27-MAR-2024, entry version 114.
DE SubName: Full=DNA-binding transcriptional regulator, LysR-type {ECO:0000313|EMBL:AAN68760.1};
GN Name=yneJ {ECO:0000313|EMBL:AAN68760.1};
GN OrderedLocusNames=PP_3152 {ECO:0000313|EMBL:AAN68760.1};
OS Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950
OS / KT2440).
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
OC Pseudomonadaceae; Pseudomonas.
OX NCBI_TaxID=160488 {ECO:0000313|EMBL:AAN68760.1, ECO:0000313|Proteomes:UP000000556};
RN [1] {ECO:0000313|EMBL:AAN68760.1, ECO:0000313|Proteomes:UP000000556}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440
RC {ECO:0000313|Proteomes:UP000000556};
RX PubMed=12534463; DOI=10.1046/j.1462-2920.2002.00366.x;
RA Nelson K.E., Weinel C., Paulsen I.T., Dodson R.J., Hilbert H.,
RA Martins dos Santos V.A., Fouts D.E., Gill S.R., Pop M., Holmes M.,
RA Brinkac L., Beanan M., DeBoy R.T., Daugherty S., Kolonay J., Madupu R.,
RA Nelson W., White O., Peterson J., Khouri H., Hance I., Chris Lee P.,
RA Holtzapple E., Scanlan D., Tran K., Moazzez A., Utterback T., Rizzo M.,
RA Lee K., Kosack D., Moestl D., Wedler H., Lauber J., Stjepandic D.,
RA Hoheisel J., Straetz M., Heim S., Kiewitz C., Eisen J.A., Timmis K.N.,
RA Dusterhoft A., Tummler B., Fraser C.M.;
RT "Complete genome sequence and comparative analysis of the metabolically
RT versatile Pseudomonas putida KT2440.";
RL Environ. Microbiol. 4:799-808(2002).
CC -!- SIMILARITY: Belongs to the LysR transcriptional regulatory family.
CC {ECO:0000256|ARBA:ARBA00009437}.
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DR EMBL; AE015451; AAN68760.1; -; Genomic_DNA.
DR RefSeq; NP_745296.1; NC_002947.4.
DR RefSeq; WP_004374302.1; NC_002947.4.
DR AlphaFoldDB; Q88I49; -.
DR STRING; 160488.PP_3152; -.
DR PaxDb; 160488-PP_3152; -.
DR KEGG; ppu:PP_3152; -.
DR PATRIC; fig|160488.4.peg.3346; -.
DR eggNOG; COG0583; Bacteria.
DR HOGENOM; CLU_039613_6_1_6; -.
DR OrthoDB; 464481at2; -.
DR PhylomeDB; Q88I49; -.
DR BioCyc; PPUT160488:G1G01-3371-MONOMER; -.
DR Proteomes; UP000000556; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR CDD; cd08442; PBP2_YofA_SoxR_like; 1.
DR Gene3D; 3.40.190.290; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR005119; LysR_subst-bd.
DR InterPro; IPR000847; Tscrpt_reg_HTH_LysR.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR30126; HTH-TYPE TRANSCRIPTIONAL REGULATOR; 1.
DR PANTHER; PTHR30126:SF98; HTH-TYPE TRANSCRIPTIONAL REGULATOR NMOR; 1.
DR Pfam; PF00126; HTH_1; 1.
DR Pfam; PF03466; LysR_substrate; 1.
DR SUPFAM; SSF53850; Periplasmic binding protein-like II; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS50931; HTH_LYSR; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000313|EMBL:AAN68760.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000000556};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 1..58
FT /note="HTH lysR-type"
FT /evidence="ECO:0000259|PROSITE:PS50931"
SQ SEQUENCE 288 AA; 31998 MW; A9908550DC29E5C5 CRC64;
MDLVQLEIFK AVAEQGSISA AAQHIHRVPS NLTTRIKQLE EDLGVELFIR EKSRLRLSPA
GWNFLEYTRR ILDLVHEARL TVAGEDPQGT FALGSLESTA AVRIPALLAA YNQRYPKVDL
DLSTGPSGTM LEGVLSGRLV AAFVDGPVLH PTLEGIPVFE EEMMVIAPLN HTPVTRAQDV
NGESIYAFRA NCSYRHHFEN WFVQDQAVPG KIHEMESYHG MLACVSAGAG LAMLPRSMLD
NMPGCSTVSA WPMSEDFRYL KTWLVWRRGT VSRSLSMFVK LLEEGRAS
//
