ID Q94GK6_ORYSJ Unreviewed; 922 AA.
AC Q94GK6; Q851A5;
DT 01-DEC-2001, integrated into UniProtKB/TrEMBL.
DT 01-DEC-2001, sequence version 1.
DT 27-MAR-2024, entry version 113.
DE SubName: Full=Retrotransposon protein, putative, Ty1-copia subclass {ECO:0000313|EMBL:ABF97098.1};
GN OrderedLocusNames=LOC_Os03g36170 {ECO:0000313|EMBL:ABF97098.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:ABF97098.1};
RN [1] {ECO:0000313|EMBL:ABF97098.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG Rice Chromosome 3 Sequencing Consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S., Luo M.,
RA Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G.,
RA Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2] {ECO:0000313|EMBL:ABF97098.1}
RP NUCLEOTIDE SEQUENCE.
RA Buell R., Wing R.A., McCombie W.A., Ouyang S.;
RL Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; DP000009; ABF97098.1; -; Genomic_DNA.
DR AlphaFoldDB; Q94GK6; -.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR013103; RVT_2.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR42648:SF18; INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR42648; TRANSPOSASE, PUTATIVE-RELATED; 1.
DR Pfam; PF07727; RVT_2; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 277..291
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 320..494
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 104..135
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 498..546
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 509..528
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 922 AA; 104710 MW; B95BC0E00B61C404 CRC64;
MSNEMNHVGK APMFNGTNYS NWKIRMSTHL KAMSFHIWSF ADLAEIHEGT SEYNDAKFHF
LKIQCETFSM LPHESVNDMY GRLNVIVNDL KGLGATYTDL EVAQKHRRRA SPHPGPKKKG
SSKVTSLSDS VSDDDCDDVS YDELVSMFEE LHAYSEKEIV KFNALKKDHA SLEVLYEELK
TSHERLTISH EKLNSSSSSC VSICDTSLVV ENDELKEQVA KLNKSLERWF KGKNTLDKIL
SEQRCILNKE RVGFIPKKGK KPFHRATPFF KSNGMYCSKC REVGHLVNDC PVGKPSETCM
FDSHYMIRKA YDGSIAARYV NYRTGGSHWV LDSGCTQHMT GDRAMFTTFE VGGTEQEKVT
FGDSSKGKSI VAELFKKFAK RAQNEFSCTL VKIRSDNGSE YKNTNIKDYC DDLGIKHELS
ATYSPQQNGV VERKNHTLVE MASYASNSKA YRVYNKNKGI VEETVDVQFD ETNGSQEGHE
NLDDVGDEGL MRAMKNMSIG DVKPIEVEDK PSTSTQGEPS TSAAPSQAQV EVEEEKAQDP
PMPPRIHTAL SKNHPIDQVL GDISKGVQTR SHVVSICEHY SFVFCFEPKH IDEALYDPDW
INAMHEELSN FVRNKVWTLV ERPRDHNAIG TKWVFRSKQD ENGLVVRNKI SLVAQGFTQV
EAIRIILAFA SCFDIELFQI DVKSAFLNGE IAELVFVEQP PGFEDPKNPN HDFKTGKVDT
TLFTNIIGDD FFVCQIYVDD IIFGSTNEVF CKEFGGDMMS REFEMSMIGK LSFFLELHIK
QLKDGTFMSQ TKYIKNQLKR FGLEDAKPIK TPMATNEHRD LDEGGKPIDL KLYRSMIGSL
LYLTASRSDI MFNVCKCARF QAAPKECHLV AVKRILRYLK YSSIIGLRYP KELLAWAKEK
RPSIRNAWMI EEVDWGPNKD IL
//
