ID Q9SAF3_ARATH Unreviewed; 260 AA.
AC Q9SAF3;
DT 01-MAY-2000, integrated into UniProtKB/TrEMBL.
DT 01-MAY-2000, sequence version 1.
DT 27-MAR-2024, entry version 171.
DE SubName: Full=At1g13195 {ECO:0000313|EMBL:ABD19665.1};
DE SubName: Full=F3F19.22 protein {ECO:0000313|EMBL:AAD31078.1};
DE SubName: Full=RING/U-box superfamily protein {ECO:0000313|EMBL:AEE28982.1};
GN Name=F3F19.22 {ECO:0000313|EMBL:AAD31078.1};
GN OrderedLocusNames=At1g13195 {ECO:0000313|EMBL:AEE28982.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AAD31078.1};
RN [1] {ECO:0000313|EMBL:AAD31078.1}
RP NUCLEOTIDE SEQUENCE.
RA Vysotskaia V.S., Schwartz J.R., Yu G., Toriumi M., Lee J.M., Lenz C.,
RA Liu S., Li J., Kremenetskaia I., Luros J., Ngan I., Gonzalez A., Altafi H.,
RA Araujo R., Chao Q., Conn L., Conway A.B., Dunn P., Hansen N., Huizar L.,
RA Kim C., Palm C., Rowley D., Shinn P., Walker M., Davis R.W., Ecker J.R.,
RA Federspiel N.A., Theologis A.;
RT "Arabidopsis thaliana chromosome 1 BAC F3F19 sequence.";
RL Submitted (MAY-1999) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:AAD31078.1}
RP NUCLEOTIDE SEQUENCE.
RA Theologis;
RL Submitted (MAY-1999) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AEE28982.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [4] {ECO:0000313|EMBL:AAM65073.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=12093376;
RA Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N.,
RA Feldmann K.A., Flavell R.B., White O., Salzberg S.L.;
RT "Full-length messenger RNA sequences greatly improve genome annotation.";
RL Genome Biol. 3:RESEARCH0029-RESEARCH0029(2002).
RN [5] {ECO:0000313|EMBL:AAM65073.1}
RP NUCLEOTIDE SEQUENCE.
RA Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.;
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6] {ECO:0000313|EMBL:AAM65073.1}
RP NUCLEOTIDE SEQUENCE.
RA Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.;
RT "Features of Arabidopsis genes and genome discovered using full-length
RT cDNAs.";
RL Plant Mol. Biol. 60:71-87(2006).
RN [7] {ECO:0000313|EMBL:ABD19665.1}
RP NUCLEOTIDE SEQUENCE.
RA Shinn P., Chen H., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases.
RN [8] {ECO:0000313|EMBL:BAE98989.1}
RP NUCLEOTIDE SEQUENCE.
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T.,
RA Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K.,
RA Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.,
RA Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA Hayashizaki Y., Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [9] {ECO:0000313|EMBL:AEE28982.1}
RP NUCLEOTIDE SEQUENCE.
RG TAIR;
RA Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN [10] {ECO:0000313|EMBL:AEE28982.1}
RP NUCLEOTIDE SEQUENCE.
RA Krishnakumar V., Cheng C.-Y., Chan A.P., Schobel S., Kim M., Ferlanti E.S.,
RA Belyaeva I., Rosen B.D., Micklem G., Miller J.R., Vaughn M., Town C.D.;
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [11] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
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DR EMBL; AC007357; AAD31078.1; -; Genomic_DNA.
DR EMBL; AY087531; AAM65073.1; -; mRNA.
DR EMBL; BT024484; ABD19665.1; -; mRNA.
DR EMBL; CP002684; AEE28982.1; -; Genomic_DNA.
DR EMBL; AK226915; BAE98989.1; -; mRNA.
DR PIR; D86266; D86266.
DR RefSeq; NP_563922.1; NM_101190.7.
DR AlphaFoldDB; Q9SAF3; -.
DR IntAct; Q9SAF3; 1.
DR STRING; 3702.Q9SAF3; -.
DR PaxDb; 3702-AT1G13195-1; -.
DR EnsemblPlants; AT1G13195.1; AT1G13195.1; AT1G13195.
DR GeneID; 837878; -.
DR Gramene; AT1G13195.1; AT1G13195.1; AT1G13195.
DR TAIR; AT1G13195; -.
DR eggNOG; KOG1039; Eukaryota.
DR HOGENOM; CLU_059830_3_0_1; -.
DR OMA; SIMSTHR; -.
DR OrthoDB; 930529at2759; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SAF3; baseline and differential.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR15315; RING FINGER PROTEIN 41, 151; 1.
DR PANTHER; PTHR15315:SF87; RING-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF13920; zf-C3HC4_3; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 1: Evidence at protein level;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Proteomics identification {ECO:0007829|PeptideAtlas:Q9SAF3};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 162..200
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
SQ SEQUENCE 260 AA; 29748 MW; 89EC96D1F01A943D CRC64;
MYNQLAISSS SSSSSYYESL KVLEADVQHA NSLAEAIPMG KNNVRLQMKL VHSNFASLLL
FLLRWIDLSS SCLIPRYLNL FHVLVYKVQS DGQPKLTTHG RKATISEFYG VILPSLQLLH
SNLDELETTD IGFDLKRLSK KITKEARSSR FSNAGLEREE ECGICLETCT KMVLPNCCHS
MCIKCYRNWN LKSQSCPFCR GSMKRVNSED LWVLAGDNDV VDTRTASRED LFRFYLYINS
LPKDYPEALF VVYYEYSNLL
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