ID R0HL54_9BRAS Unreviewed; 485 AA.
AC R0HL54;
DT 26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT 26-JUN-2013, sequence version 1.
DT 27-MAR-2024, entry version 37.
DE RecName: Full=HTH OST-type domain-containing protein {ECO:0000259|PROSITE:PS51644};
GN ORFNames=CARUB_v10013562mg {ECO:0000313|EMBL:EOA30439.1};
OS Capsella rubella.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella.
OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA30439.1, ECO:0000313|Proteomes:UP000029121};
RN [1] {ECO:0000313|Proteomes:UP000029121}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Monte Gargano {ECO:0000313|Proteomes:UP000029121};
RX PubMed=23749190; DOI=10.1038/ng.2669;
RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L.,
RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., Mandakova T.,
RA Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., Brandvain Y.,
RA Coop G., Andolfatto P., Hu T.T., Blanchette M., Clark R.M., Quesneville H.,
RA Nordborg M., Gaut B.S., Lysak M.A., Jenkins J., Grimwood J., Chapman J.,
RA Prochnik S., Shu S., Rokhsar D., Schmutz J., Weigel D., Wright S.I.;
RT "The Capsella rubella genome and the genomic consequences of rapid mating
RT system evolution.";
RL Nat. Genet. 45:831-835(2013).
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DR EMBL; KB870807; EOA30439.1; -; Genomic_DNA.
DR RefSeq; XP_006297541.1; XM_006297479.1.
DR AlphaFoldDB; R0HL54; -.
DR STRING; 81985.R0HL54; -.
DR GeneID; 17890770; -.
DR KEGG; crb:17890770; -.
DR eggNOG; ENOG502QUA6; Eukaryota.
DR OrthoDB; 3077715at2759; -.
DR Proteomes; UP000029121; Unassembled WGS sequence.
DR GO; GO:0005777; C:peroxisome; IEA:InterPro.
DR GO; GO:0004540; F:RNA nuclease activity; IEA:InterPro.
DR GO; GO:0010468; P:regulation of gene expression; IEA:InterPro.
DR CDD; cd08824; LOTUS; 2.
DR CDD; cd10910; PIN_limkain_b1_N_like; 1.
DR Gene3D; 3.40.50.1010; 5'-nuclease; 1.
DR Gene3D; 3.30.420.610; LOTUS domain-like; 2.
DR InterPro; IPR041966; LOTUS-like.
DR InterPro; IPR024768; Marf1.
DR InterPro; IPR021139; NYN.
DR InterPro; IPR025605; OST-HTH/LOTUS_dom.
DR PANTHER; PTHR14379; LIMKAIN B LKAP; 1.
DR PANTHER; PTHR14379:SF82; MEIOSIS REGULATOR AND MRNA STABILITY FACTOR 1; 1.
DR Pfam; PF01936; NYN; 1.
DR Pfam; PF12872; OST-HTH; 2.
DR PROSITE; PS51644; HTH_OST; 2.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000029121}.
FT DOMAIN 291..365
FT /note="HTH OST-type"
FT /evidence="ECO:0000259|PROSITE:PS51644"
FT DOMAIN 412..485
FT /note="HTH OST-type"
FT /evidence="ECO:0000259|PROSITE:PS51644"
FT REGION 384..406
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 485 AA; 53769 MW; E5FC9BF506E6D5F1 CRC64;
MIQKAMSSYY CNPSAAIVSV DSSEQRMNYS SDLNMIANQR RSVTDGPVAV LWDIENCPVP
SDVRPEDVAS NIRMAIELHP VISGPVVTFS AYGDFNGFPR RVREGCQRTG VKLVDVPNGR
KDASDKAILI DMFLFVLDNK PPSTIVLISG DVDFAPALHI LGQRGYTVIL VIPSGVYVNS
ALSSGGRFVW DWHSIVHGEG FVPVPKPRVV PYLMGCNVND NSHLDGMNED ETILYRGSCC
SNARESSVMV SQFQNECSGS VMSCWPSNLR ESLVCPPPGQ LESTMWVAPG DLNGLKGQLV
KLLELSGGCI PLMRIPSEYQ RNFSKPLFVS DYGVAKLVDL FKKMGDVITV DGKGNKRIVY
LRNSKPNVIS PSSPVVLLRR EKKGKEPNEE MTYRGVSSDD LSDTGSVHSE RNLEEFKVEL
QDILVSYCCR VQLDCFEAIY KLRYKRPLDY KKMGVNHLEQ LFDKVKDVVA IYEDPATGSK
LIGAF
//
