ID R2P6Z3_9ENTE Unreviewed; 433 AA.
AC R2P6Z3;
DT 26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT 26-JUN-2013, sequence version 1.
DT 24-JAN-2024, entry version 39.
DE SubName: Full=RNA polymerase sigma-54 factor {ECO:0000313|EMBL:EOH80057.1};
GN ORFNames=UAK_01212 {ECO:0000313|EMBL:EOH80057.1};
OS Enterococcus raffinosus ATCC 49464.
OC Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
OC Enterococcus.
OX NCBI_TaxID=1158602 {ECO:0000313|EMBL:EOH80057.1, ECO:0000313|Proteomes:UP000013877};
RN [1] {ECO:0000313|EMBL:EOH80057.1, ECO:0000313|Proteomes:UP000013877}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 49464 {ECO:0000313|EMBL:EOH80057.1,
RC ECO:0000313|Proteomes:UP000013877};
RG The Broad Institute Genome Sequencing Platform;
RG The Broad Institute Genome Sequencing Center for Infectious Disease;
RA Earl A.M., Gilmore M.S., Lebreton F., Walker B., Young S.K., Zeng Q.,
RA Gargeya S., Fitzgerald M., Haas B., Abouelleil A., Alvarado L.,
RA Arachchi H.M., Berlin A.M., Chapman S.B., Dewar J., Goldberg J., Griggs A.,
RA Gujja S., Hansen M., Howarth C., Imamovic A., Larimer J., McCowan C.,
RA Murphy C., Neiman D., Pearson M., Priest M., Roberts A., Saif S., Shea T.,
RA Sisk P., Sykes S., Wortman J., Nusbaum C., Birren B.;
RT "The Genome Sequence of Enterococcus raffinosus ATCC_49464.";
RL Submitted (FEB-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EOH80057.1}.
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DR EMBL; AJAL01000004; EOH80057.1; -; Genomic_DNA.
DR RefSeq; WP_010744518.1; NZ_KB946257.1.
DR AlphaFoldDB; R2P6Z3; -.
DR PATRIC; fig|1158602.3.peg.1224; -.
DR eggNOG; COG1508; Bacteria.
DR HOGENOM; CLU_020569_1_1_9; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000013877; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00717; SIGMA54_1; 1.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 76..262
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 276..431
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
SQ SEQUENCE 433 AA; 50246 MW; 1CFBA60BB67A3074 CRC64;
MKFQQGYSQK QQQTQKLAMT QELQQAIQIL QFNTEELQDY VETVSLENPL FDVVAPKIQS
DLMQMHGGAV KEESFIQIAD HPVSLFEHLI NQIHLNYRDT FIREIMLVLV EFIDVNGYLK
VDEERVKEEL KATDLQYLDA LTLLQQLDPP GVGARNLQEC LMLQTEQDDY APDLAYLLLE
ESFDAIAKRK FEQIAKSYQI SLAQVQKILD YIRTLNPFPG ASFGGQDSNF IIPDLTLVRR
ENQLVVLSNK RGQLRLNFQE NYFNRLKEQA DDETKAYLKE KLQQFEWLNK TLGQRKDTIL
EVGKIIVQHQ AHFFEDKQGA LKPLMLKDVA KELDVHESTI SRTVNGKYIE TDFGVFELRS
FFVNKVNDED TSADEVKQLI ASFVEQEDKR KPLSDQKIVE LLAEKDQKIS RRTVAKYRDA
LNIPSSSKRK RFD
//
