ID R4U5R3_9MOLU Unreviewed; 442 AA.
AC R4U5R3;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 27-MAR-2024, entry version 55.
DE SubName: Full=RNA polymerase sigma factor RpoD {ECO:0000313|EMBL:AGM25943.1};
GN Name=rpoD {ECO:0000313|EMBL:AGM25943.1};
GN ORFNames=SSYRP_v1c03490 {ECO:0000313|EMBL:AGM25943.1};
OS Spiroplasma syrphidicola EA-1.
OC Bacteria; Mycoplasmatota; Mollicutes; Entomoplasmatales; Spiroplasmataceae;
OC Spiroplasma.
OX NCBI_TaxID=1276229 {ECO:0000313|EMBL:AGM25943.1, ECO:0000313|Proteomes:UP000013963};
RN [1] {ECO:0000313|EMBL:AGM25943.1, ECO:0000313|Proteomes:UP000013963}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=EA-1 {ECO:0000313|EMBL:AGM25943.1};
RX PubMed=23711669; DOI=10.1093/gbe/evt084;
RA Ku C., Lo W.S., Chen L.L., Kuo C.H.;
RT "Complete genomes of two dipteran-associated spiroplasmas provided insights
RT into the origin, dynamics, and impacts of viral invasion in spiroplasma.";
RL Genome Biol. Evol. 5:1151-1164(2013).
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DR EMBL; CP005078; AGM25943.1; -; Genomic_DNA.
DR RefSeq; WP_016340592.1; NC_021284.1.
DR AlphaFoldDB; R4U5R3; -.
DR STRING; 1276229.SSYRP_v1c03490; -.
DR KEGG; ssyr:SSYRP_v1c03490; -.
DR PATRIC; fig|1276229.3.peg.346; -.
DR eggNOG; COG0568; Bacteria.
DR HOGENOM; CLU_014793_3_3_14; -.
DR OrthoDB; 9809557at2; -.
DR Proteomes; UP000013963; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 3.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR PANTHER; PTHR30603:SF47; RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 3.
DR PROSITE; PS00715; SIGMA70_1; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000013963};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 172..185
FT /note="RNA polymerase sigma-70"
FT /evidence="ECO:0000259|PROSITE:PS00715"
SQ SEQUENCE 442 AA; 51724 MW; 8414F7ACDDA29B2A CRC64;
MELTKKEVKD MQTFEEFKEY VSKYLEENNN EIEQEKLLSL INDHFEIDDN DVDEYFEELL
SNGVDFSDVT GIEEVEEQPE KPVKKAAEEK IKYKVGGISN ETKIQDIIKA YFNVLGTSKI
LTREEEIKYA KMLESKDDEE RKYGRDKLIT SNLKLVVSVA RKHLNRGLDF SDLIEEGNIG
LMKAVDKFDY KRGFKFSTYA TWWIRQAITR AIADQARTIR IPVHMVETIN KLTRIERQLT
QELGREPSFD EIAERMGQGM TGEKVREIKR LSIEPVSLEK PIGDEDDTHF GDFVDDKDIF
TPDEYAEKES LREVIDEVFH EILSAREEKV IRMRFGILPT KLRTVLRLAK ECEDETFPEL
VQTIKTLDIH YDTPIEKVQS RKNKLIDKHL SKYDSPKTLE EVGREFKVTR ERIRQIEAKT
IRKFKPNQAT SKAKVLKDFF KG
//
