ID R7Q8B5_CHOCR Unreviewed; 332 AA.
AC R7Q8B5;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 27-MAR-2024, entry version 38.
DE RecName: Full=Tc1-like transposase DDE domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=CHC_T00002512001 {ECO:0000313|EMBL:CDF33725.1};
OS Chondrus crispus (Carrageen Irish moss) (Polymorpha crispa).
OC Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniophycidae; Gigartinales;
OC Gigartinaceae; Chondrus.
OX NCBI_TaxID=2769 {ECO:0000313|EMBL:CDF33725.1, ECO:0000313|Proteomes:UP000012073};
RN [1] {ECO:0000313|Proteomes:UP000012073}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Stackhouse {ECO:0000313|Proteomes:UP000012073};
RX PubMed=23503846; DOI=10.1073/pnas.1221259110;
RA Collen J., Porcel B., Carre W., Ball S.G., Chaparro C., Tonon T.,
RA Barbeyron T., Michel G., Noel B., Valentin K., Elias M., Artiguenave F.,
RA Arun A., Aury J.M., Barbosa-Neto J.F., Bothwell J.H., Bouget F.Y.,
RA Brillet L., Cabello-Hurtado F., Capella-Gutierrez S., Charrier B.,
RA Cladiere L., Cock J.M., Coelho S.M., Colleoni C., Czjzek M., Da Silva C.,
RA Delage L., Denoeud F., Deschamps P., Dittami S.M., Gabaldon T.,
RA Gachon C.M., Groisillier A., Herve C., Jabbari K., Katinka M., Kloareg B.,
RA Kowalczyk N., Labadie K., Leblanc C., Lopez P.J., McLachlan D.H.,
RA Meslet-Cladiere L., Moustafa A., Nehr Z., Nyvall Collen P., Panaud O.,
RA Partensky F., Poulain J., Rensing S.A., Rousvoal S., Samson G.,
RA Symeonidi A., Weissenbach J., Zambounis A., Wincker P., Boyen C.;
RT "Genome structure and metabolic features in the red seaweed Chondrus
RT crispus shed light on evolution of the Archaeplastida.";
RL Proc. Natl. Acad. Sci. U.S.A. 110:5247-5252(2013).
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DR EMBL; HG001656; CDF33725.1; -; Genomic_DNA.
DR RefSeq; XP_005713544.1; XM_005713487.1.
DR AlphaFoldDB; R7Q8B5; -.
DR STRING; 2769.R7Q8B5; -.
DR EnsemblPlants; CDF33725; CDF33725; CHC_T00002512001.
DR GeneID; 17321261; -.
DR Gramene; CDF33725; CDF33725; CHC_T00002512001.
DR KEGG; ccp:CHC_T00002512001; -.
DR OMA; ENGISWI; -.
DR OrthoDB; 1780329at2759; -.
DR PhylomeDB; R7Q8B5; -.
DR Proteomes; UP000012073; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR038717; Tc1-like_DDE_dom.
DR InterPro; IPR025898; Tc3_transposase_DNA-bd_dom.
DR PANTHER; PTHR23022:SF138; TRANSPOSABLE ELEMENT TC3 TRANSPOSASE; 1.
DR PANTHER; PTHR23022; TRANSPOSABLE ELEMENT-RELATED; 1.
DR Pfam; PF13358; DDE_3; 1.
DR Pfam; PF11427; HTH_Tnp_Tc3_1; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000012073};
KW Transposable element {ECO:0000256|ARBA:ARBA00022464}.
FT DOMAIN 3..50
FT /note="Tc3 transposase DNA binding"
FT /evidence="ECO:0000259|Pfam:PF11427"
FT DOMAIN 143..292
FT /note="Tc1-like transposase DDE"
FT /evidence="ECO:0000259|Pfam:PF13358"
SQ SEQUENCE 332 AA; 38590 MW; 99E4C174B4E7E649 CRC64;
MPRGTHLSQH EQGQIQALRL NNWTIRRIAA HISRSRNVMA TFLRNLGLYG KKKRPGRPSK
RTSTARRALL REAHKGHLCS SKLVKTLSLP VTPSTVRGIL RATPTIQYSK MVPAPMMLPR
HKIAREQWCR EKVTWTVSDW MNVVWSDEKK FNLDGPDGFG YYWHDLRTDK RMFSKRQQGG
DSVMVWGAFS GTKKCELAVL YGKQDAIKYI DTLESYLLPF VDQEMGPSWV FMQDGASIHR
ARRTFQWFDE EEIPLLEWPA KSPDLNPIEN LWSILARTVY AHQRQFKDVD ELLEVIMEAW
DEVSEECLEK LVRSMQKRCF ECVMAKGGPT KY
//
