ID R7VTU6_COLLI Unreviewed; 755 AA.
AC R7VTU6;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 24-JAN-2024, entry version 41.
DE SubName: Full=Upstream binding transcription factor, RNA polymerase I, transcript variant X6 {ECO:0000313|EMBL:PKK17238.1};
GN Name=UBTF {ECO:0000313|EMBL:PKK17238.1};
GN ORFNames=A306_00013925 {ECO:0000313|EMBL:PKK17238.1};
OS Columba livia (Rock dove).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Columba.
OX NCBI_TaxID=8932 {ECO:0000313|EMBL:PKK17238.1, ECO:0000313|Proteomes:UP000053872};
RN [1] {ECO:0000313|EMBL:PKK17238.1, ECO:0000313|Proteomes:UP000053872}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC TISSUE=Blood {ECO:0000313|EMBL:PKK17238.1};
RX PubMed=23371554; DOI=10.1126/science.1230422;
RA Shapiro M.D., Kronenberg Z., Li C., Domyan E.T., Pan H., Campbell M.,
RA Tan H., Huff C.D., Hu H., Vickrey A.I., Nielsen S.C., Stringham S.A.,
RA Hu H., Willerslev E., Gilbert M.T., Yandell M., Zhang G., Wang J.;
RT "Genomic diversity and evolution of the head crest in the rock pigeon.";
RL Science 339:1063-1067(2013).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PKK17238.1}.
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DR EMBL; AKCR02000378; PKK17238.1; -; Genomic_DNA.
DR RefSeq; XP_005515658.1; XM_005515601.1.
DR AlphaFoldDB; R7VTU6; -.
DR GeneID; 102097130; -.
DR CTD; 7343; -.
DR eggNOG; KOG0381; Eukaryota.
DR OrthoDB; 4260911at2759; -.
DR Proteomes; UP000053872; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-UniRule.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd21998; HMG-box_UBF1_rpt1-like; 1.
DR CDD; cd21999; HMG-box_UBF1_rpt2; 1.
DR CDD; cd22000; HMG-box_UBF1_rpt3; 1.
DR CDD; cd22001; HMG-box_UBF1_rpt4; 1.
DR CDD; cd22002; HMG-box_UBF1_rpt5; 1.
DR CDD; cd22003; HMG-box_UBF1_rpt6-like; 1.
DR Gene3D; 1.10.30.10; High mobility group box domain; 6.
DR InterPro; IPR029215; HMG_box_5.
DR InterPro; IPR009071; HMG_box_dom.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR PANTHER; PTHR46318; UPSTREAM BINDING TRANSCRIPTION FACTOR; 1.
DR PANTHER; PTHR46318:SF3; UPSTREAM BINDING TRANSCRIPTION FACTOR; 1.
DR Pfam; PF00505; HMG_box; 3.
DR Pfam; PF09011; HMG_box_2; 1.
DR Pfam; PF14887; HMG_box_5; 1.
DR SMART; SM00398; HMG; 6.
DR SUPFAM; SSF47095; HMG-box; 6.
DR PROSITE; PS50118; HMG_BOX_2; 5.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000053872};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 112..180
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DOMAIN 196..264
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DOMAIN 298..362
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DOMAIN 407..475
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DOMAIN 482..549
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
SQ SEQUENCE 755 AA; 88226 MW; C94B3F08876944BB CRC64;
MNGEAECPAD LEMTAPKNQD RWSQEDMLTL LECMKNNLPS NDGSKFKTTE SHLDWEKVAF
KDFSGEMCKM KWMEISNEVR KFRTLTELIM DAEEHVKNPY KGKKLKKHPD FPKKPLTPYF
RFFMEKRAKY AKLHPEMSNL DLTKILSKKY KELPEKKKMK YIQDFQREKQ EFERNLARFR
EDHPDLIQNA KKSDIPEKPK TPQQLWYNHE KKIYLKVRPD ATTKEVKESL GKQWSQLSDK
KRLKWIHKAL EQRKEYEEIM RDYIQKHPEL NISEEGITRS TLTKAERQLK DKFDGRPTKP
PPNSYSLYCA ELMANMKDVP STERMVLCSQ QWKLLSQKEK DAYHKKCDQK KKDYEVELLR
FLESLPEEEQ QRVLGEEKML GSNRKGATSP ASKKSSPETG KASSEKPKRP ISAMFIFSEE
KRKQLQEERP ELSESELTRL LARMWNDLSE KKKAKYKARE AAMKAQSEKK HGSDKEERGK
LPESPKTAEE IWQQSVIGDY LARFKNDRGK ALKAMEATWN NMEKKEKLMW IKKAAEDQKR
YERELSEMRA PPCSTNSKKM KFQGEPKKPP MNGYQKFSQE LLSNGELNHL PLKERMVEIG
RISQGQKDHY KKLAEEQQKQ YKVHLDIWLK SLSPQERAAY KEHTSNKRKS MGKIRGPNPK
MKPTMQSKSE SEDDDEEEEE EEDDDEDEDD DDDNGDSSEE GGDSSESSSE EESEDGDEND
EDDEDDEDED EDDNDSEGSS SSSSSSGDSS DSDSN
//
