ID R7ZZE6_9BACT Unreviewed; 484 AA.
AC R7ZZE6;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 24-JAN-2024, entry version 39.
DE SubName: Full=RNA polymerase sigma-54 factor RpoN {ECO:0000313|EMBL:EON79428.1};
GN ORFNames=ADIS_0118 {ECO:0000313|EMBL:EON79428.1};
OS Lunatimonas lonarensis.
OC Bacteria; Bacteroidota; Cytophagia; Cytophagales; Cyclobacteriaceae.
OX NCBI_TaxID=1232681 {ECO:0000313|EMBL:EON79428.1, ECO:0000313|Proteomes:UP000013909};
RN [1] {ECO:0000313|EMBL:EON79428.1, ECO:0000313|Proteomes:UP000013909}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AK24 {ECO:0000313|EMBL:EON79428.1,
RC ECO:0000313|Proteomes:UP000013909};
RA Singh A.;
RT "A novel strain isolated from Lonar lake, Maharashtra, India.";
RL Submitted (FEB-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EON79428.1}.
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DR EMBL; AQHR01000004; EON79428.1; -; Genomic_DNA.
DR RefSeq; WP_010852272.1; NZ_AQHR01000004.1.
DR AlphaFoldDB; R7ZZE6; -.
DR STRING; 1232681.ADIS_0118; -.
DR PATRIC; fig|1288963.3.peg.118; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000013909; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000013909};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 109..302
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 324..482
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 42..73
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 52..73
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 484 AA; 56014 MW; 95866916F9148636 CRC64;
MQRLNLNQML SQKLSPQQIQ FIKLLQVPTV ELEARIEEEL EINPALEEGK EEELESPTDD
FQENGDTAET GDDQDINLDE YLSEEYGGYK MQGDGNYNPD EENREIPLSS GTTLHEQLIS
QLNFLRLDER QKVIGLQLIG SIENDGYIRR DLDAIINDLA FSQNIETDID ELEDILLKIQ
SFDPPGIAAR NLQECLIIQL ERREHREDSV VQQAIQVVQH CFDEFTKKHY DKILKKCQIN
EDELKEIIQL ITRLNPKPGG VSDGLMRTQY LFPDFLLTEN NGKFEIALNS KNAPDLRVSR
SYSELFETYE KSDKKDRKLK ETVTFVKQKL DAARWFIDAI KQRQQTLLKT MEAILEYQYE
FFLDGDETKL RPMILKDIAE KIDMDISTVS RVANSKSIQT EFGIFPLKYF FSEGIATDGG
EDVSNREVKS VLGKMVEEED KKKPLSDDKL VKLLNKKGYN IARRTVAKYR EQLQIPVARL
RKEL
//
