ID S5Y7F8_PARAH Unreviewed; 462 AA.
AC S5Y7F8;
DT 16-OCT-2013, integrated into UniProtKB/TrEMBL.
DT 16-OCT-2013, sequence version 1.
DT 27-MAR-2024, entry version 42.
DE SubName: Full=Transcriptional regulator, XRE family {ECO:0000313|EMBL:AGT11455.1};
GN ORFNames=JCM7686_pAMI6p125 {ECO:0000313|EMBL:AGT11455.1};
OS Paracoccus aminophilus JCM 7686.
OG Plasmid pAMI6 {ECO:0000313|EMBL:AGT11455.1,
OG ECO:0000313|Proteomes:UP000015480}.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Paracoccaceae; Paracoccus.
OX NCBI_TaxID=1367847 {ECO:0000313|EMBL:AGT11455.1, ECO:0000313|Proteomes:UP000015480};
RN [1] {ECO:0000313|EMBL:AGT11455.1, ECO:0000313|Proteomes:UP000015480}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JCM 7686 {ECO:0000313|EMBL:AGT11455.1};
RC PLASMID=Plasmid pAMI6 {ECO:0000313|Proteomes:UP000015480};
RX PubMed=24517536; DOI=10.1186/1471-2164-15-124;
RA Dziewit L., Czarnecki J., Wibberg D., Radlinska M., Mrozek P., Szymczak M.,
RA Schluter A., Puhler A., Bartosik D.;
RT "Architecture and functions of a multipartite genome of the methylotrophic
RT bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary
RT chromids.";
RL BMC Genomics 15:124-124(2014).
CC -!- SIMILARITY: Belongs to the short-chain fatty acyl-CoA assimilation
CC regulator (ScfR) family. {ECO:0000256|ARBA:ARBA00007227}.
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DR EMBL; CP006654; AGT11455.1; -; Genomic_DNA.
DR RefSeq; WP_020953226.1; NC_022044.1.
DR AlphaFoldDB; S5Y7F8; -.
DR KEGG; pami:JCM7686_pAMI6p125; -.
DR PATRIC; fig|1367847.3.peg.4436; -.
DR HOGENOM; CLU_046383_0_0_5; -.
DR OrthoDB; 1123084at2; -.
DR Proteomes; UP000015480; Plasmid pAMI6.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00093; HTH_XRE; 1.
DR Gene3D; 1.10.260.40; lambda repressor-like DNA-binding domains; 1.
DR InterPro; IPR001387; Cro/C1-type_HTH.
DR InterPro; IPR026281; HTH_RamB.
DR InterPro; IPR010359; IrrE_HExxH.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR InterPro; IPR018653; ScfR_C.
DR PANTHER; PTHR46797; HTH-TYPE TRANSCRIPTIONAL REGULATOR; 1.
DR PANTHER; PTHR46797:SF23; HTH-TYPE TRANSCRIPTIONAL REGULATOR PRPR; 1.
DR Pfam; PF13560; HTH_31; 1.
DR Pfam; PF06114; Peptidase_M78; 1.
DR Pfam; PF09856; ScfRs; 1.
DR PIRSF; PIRSF019251; Rv0465c; 1.
DR SMART; SM00530; HTH_XRE; 1.
DR SUPFAM; SSF47413; lambda repressor-like DNA-binding domains; 1.
DR PROSITE; PS50943; HTH_CROC1; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Plasmid {ECO:0000313|EMBL:AGT11455.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000015480};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 10..64
FT /note="HTH cro/C1-type"
FT /evidence="ECO:0000259|PROSITE:PS50943"
SQ SEQUENCE 462 AA; 50718 MW; 3C423F2BA942C6D8 CRC64;
MAKTFMGVRL RRLREERGLT QAALARALEI SPSYLNQIEQ NQRPLTVPVL LKLNQAFGLD
VQLFSDADEG RLITELRGAL ADQGAGASLA EVRELAANMP AVARAIVAMQ RRLRDTAERA
DLLAGRLDNR DSAASPAAFE SVRDWFYERR NYIPELDEAA EAIGAALPPG RMTPGLIDRL
AGRHGIRIAL APESGSLRHF DPAARLLHLA AHLSEGQQAY QIATQLAFLE QDELIRRLSD
EPGLGPDARA LLRIGLANYF AGALLLPYRL FLATAEALGY DIDLLGRRFG VGFETTCHRL
STLQRPEARG VPFFFIRTDR AGNISKRQSA TDFHFSRIGG SCPLWNIYEA FSRPGEIVRQ
VAQMPDGRSY LWIARLVRHG QGGFAALEKT FTVAVGCDLA HAERLVYARG LDLHDPGLAT
RIGPGCKVCE RPACPQRAFP MLGRALDVSP TDARFAPYSS GA
//
