ID SPIN1_ORYSJ Reviewed; 281 AA.
AC Q75GR5; A0A0P0W592;
DT 05-OCT-2010, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 24-JAN-2024, entry version 113.
DE RecName: Full=KH domain-containing protein SPIN1;
DE AltName: Full=SPL11-interacting protein 1;
GN Name=SPIN1; OrderedLocusNames=Os03g0815700, LOC_Os03g60110;
GN ORFNames=OsJ_13097, OSJNBb0042K11.3;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP FUNCTION, INTERACTION WITH SPL11, SUBCELLULAR LOCATION, TISSUE SPECIFICITY,
RP INDUCTION, AND UBIQUITINATION.
RX PubMed=18586868; DOI=10.1105/tpc.108.058610;
RA Vega-Sanchez M.E., Zeng L., Chen S., Leung H., Wang G.L.;
RT "SPIN1, a K homology domain protein negatively regulated and ubiquitinated
RT by the E3 ubiquitin ligase SPL11, is involved in flowering time control in
RT rice.";
RL Plant Cell 20:1456-1469(2008).
CC -!- FUNCTION: Involved in flowering time control. Binds DNA and RNA in
CC vitro. {ECO:0000269|PubMed:18586868}.
CC -!- SUBUNIT: Interacts (via N-terminus) with SPL11.
CC {ECO:0000269|PubMed:18586868}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:18586868}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, stems, leaves and panicles.
CC {ECO:0000269|PubMed:18586868}.
CC -!- INDUCTION: Circadian-regulated, with a peak in expression in the middle
CC of the day under long day conditions, and from the middle of the day
CC until night under short day conditions. {ECO:0000269|PubMed:18586868}.
CC -!- PTM: Ubiquitinated by SPL11. Ubiquitination probably leads to its
CC subsequent degradation, thus negatively regulating flowering time
CC control. {ECO:0000269|PubMed:18586868}.
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DR EMBL; AC139172; AAR01750.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF99540.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF13599.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS87035.1; -; Genomic_DNA.
DR EMBL; CM000140; EEE60169.1; -; Genomic_DNA.
DR EMBL; AK065405; BAG89507.1; -; mRNA.
DR RefSeq; XP_015628084.1; XM_015772598.1.
DR AlphaFoldDB; Q75GR5; -.
DR SMR; Q75GR5; -.
DR STRING; 39947.Q75GR5; -.
DR PaxDb; 39947-Q75GR5; -.
DR EnsemblPlants; Os03t0815700-01; Os03t0815700-01; Os03g0815700.
DR GeneID; 4334557; -.
DR Gramene; Os03t0815700-01; Os03t0815700-01; Os03g0815700.
DR KEGG; osa:4334557; -.
DR eggNOG; KOG1588; Eukaryota.
DR HOGENOM; CLU_065679_0_1_1; -.
DR InParanoid; Q75GR5; -.
DR OMA; FPQGASM; -.
DR OrthoDB; 1397at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q75GR5; OS.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003677; F:DNA binding; IDA:UniProtKB.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IDA:UniProtKB.
DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
DR GO; GO:0048579; P:negative regulation of long-day photoperiodism, flowering; IMP:UniProtKB.
DR GO; GO:0048577; P:negative regulation of short-day photoperiodism, flowering; IMP:UniProtKB.
DR GO; GO:0048024; P:regulation of mRNA splicing, via spliceosome; IBA:GO_Central.
DR CDD; cd22467; KH-I_SPIN1_like; 1.
DR Gene3D; 3.30.1370.10; K Homology domain, type 1; 1.
DR InterPro; IPR045071; BBP-like.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR032377; STAR_dimer.
DR PANTHER; PTHR11208:SF42; KH DOMAIN-CONTAINING PROTEIN SPIN1; 1.
DR PANTHER; PTHR11208; RNA-BINDING PROTEIN RELATED; 1.
DR Pfam; PF16544; STAR_dimer; 1.
DR SMART; SM00322; KH; 1.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
PE 1: Evidence at protein level;
KW DNA-binding; Flowering; Nucleus; Reference proteome; RNA-binding;
KW Ubl conjugation.
FT CHAIN 1..281
FT /note="KH domain-containing protein SPIN1"
FT /id="PRO_0000397683"
FT DOMAIN 139..205
FT /note="KH"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 77..126
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 255..281
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 7..22
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 82..102
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 258..281
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 281 AA; 31285 MW; A841FA76373BD71D CRC64;
MSGLYSPGFS PARNLSPQIR SNPTDVDSQY LAELLAEHQK LGPFMQVLPI CSKLLSQEIM
RVSSIVHNHG FGDFDRHRFR SPSPMSSPNP RSNRSGNGFS PWNGLHQERL GFPQGTSMDW
QGAPPSPSSH VVKKILRLDV PVDSYPNFNF VGRILGPRGN SLKRVEASTG CRVFIRGKGS
IKDPGKEDKL RGKPGYEHLS DPLHILIEAE FPASIIDARL RHAQEVIEEL LKPVDESQDF
YKRQQLRELA MLNSTLREDS PHPGSVSPFS NGGMKRAKTG Q
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