ID   T1VYY5_VIBVL            Unreviewed;       310 AA.
AC   T1VYY5;
DT   13-NOV-2013, integrated into UniProtKB/TrEMBL.
DT   13-NOV-2013, sequence version 1.
DT   13-SEP-2023, entry version 26.
DE   SubName: Full=RNA polymerase sigma factor RpoD {ECO:0000313|EMBL:AGT96122.1};
DE   Flags: Fragment;
GN   Name=rpoD {ECO:0000313|EMBL:AGT96122.1};
OS   Vibrio vulnificus.
OC   Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC   Vibrio.
OX   NCBI_TaxID=672 {ECO:0000313|EMBL:AGT96122.1};
RN   [1] {ECO:0000313|EMBL:AGT96122.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=VvMBC33 {ECO:0000313|EMBL:AGT96103.1}, VvMBC62
RC   {ECO:0000313|EMBL:AGT96122.1}, VvMBC63 {ECO:0000313|EMBL:AGT96123.1},
RC   VvMBC71 {ECO:0000313|EMBL:AGT96130.1}, VvMBC80
RC   {ECO:0000313|EMBL:AGT96137.1}, and VvMBC87
RC   {ECO:0000313|EMBL:AGT96143.1};
RA   Reynaud Y., Pitchford S., De Decker S., Wikfors G.H., Brown C.L.;
RT   "Molecular Typing of Environmental and Clinical Strains of Vibrio
RT   vulnificus Isolated in the Northeastern USA.";
RL   PLoS ONE 8:E83357-E83357(2013).
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DR   EMBL; KF255185; AGT96103.1; -; Genomic_DNA.
DR   EMBL; KF255204; AGT96122.1; -; Genomic_DNA.
DR   EMBL; KF255205; AGT96123.1; -; Genomic_DNA.
DR   EMBL; KF255212; AGT96130.1; -; Genomic_DNA.
DR   EMBL; KF255219; AGT96137.1; -; Genomic_DNA.
DR   EMBL; KF255225; AGT96143.1; -; Genomic_DNA.
DR   AlphaFoldDB; T1VYY5; -.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:InterPro.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR   InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR   InterPro; IPR007631; RNA_pol_sigma_70_non-ess.
DR   InterPro; IPR007127; RNA_pol_sigma_70_r1_1.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   Pfam; PF04546; Sigma70_ner; 1.
DR   Pfam; PF03979; Sigma70_r1_1; 1.
DR   Pfam; PF00140; Sigma70_r1_2; 1.
DR   SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
PE   4: Predicted;
FT   DOMAIN          1..38
FT                   /note="RNA polymerase sigma factor 70 region 1.1"
FT                   /evidence="ECO:0000259|Pfam:PF03979"
FT   DOMAIN          56..86
FT                   /note="RNA polymerase sigma-70 region 1.2"
FT                   /evidence="ECO:0000259|Pfam:PF00140"
FT   DOMAIN          97..309
FT                   /note="RNA polymerase sigma factor 70 non-essential"
FT                   /evidence="ECO:0000259|Pfam:PF04546"
FT   REGION          141..182
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        147..181
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   NON_TER         1
FT                   /evidence="ECO:0000313|EMBL:AGT96122.1"
FT   NON_TER         310
FT                   /evidence="ECO:0000313|EMBL:AGT96122.1"
SQ   SEQUENCE   310 AA;  34750 MW;  E7D1E76C35F77F88 CRC64;
     DIIQMINDMG IKVVETAPDA DDLALSDESN ITDEDAAEAA AAALSSVESE IGRTTDPVRM
     YMREMGTVEL LTREGEIDIA KRIEDGINQV QSSVAEYPGT IPYILEQFDK VQAEELRLTD
     LISGFVDPNA DETAAPTATH IGSELAESDL EDEDNTDIDD EDEDEDEDGD SSSDSEDDVG
     IDPEMALEKF TQLRNSYQNL QLAMNEHGRE SAQTAQAHEL MLDVFKEFRL TPKQFDHLVN
     ELRTAMDRVR TQERLIMKSA VEIAKMPKKS FIALFTGNES SEEWLDKILV SDKPYAEKIK
     LHEEDIRRSI
//