ID U2J4M5_9SPHI Unreviewed; 900 AA.
AC U2J4M5;
DT 13-NOV-2013, integrated into UniProtKB/TrEMBL.
DT 13-NOV-2013, sequence version 1.
DT 27-MAR-2024, entry version 54.
DE RecName: Full=HTH araC/xylS-type domain-containing protein {ECO:0000259|PROSITE:PS01124};
GN ORFNames=M472_14120 {ECO:0000313|EMBL:ERJ59904.1};
OS Sphingobacterium paucimobilis HER1398.
OC Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
OC Sphingobacteriaceae; Sphingobacterium.
OX NCBI_TaxID=1346330 {ECO:0000313|EMBL:ERJ59904.1, ECO:0000313|Proteomes:UP000016584};
RN [1] {ECO:0000313|EMBL:ERJ59904.1, ECO:0000313|Proteomes:UP000016584}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=HER1398 {ECO:0000313|EMBL:ERJ59904.1,
RC ECO:0000313|Proteomes:UP000016584};
RX PubMed=23929486;
RA White R.A.III., Suttle C.A.;
RT "The Draft Genome Sequence of Sphingomonas paucimobilis Strain HER1398
RT (Proteobacteria), Host to the Giant PAU Phage, Indicates That It Is a
RT Member of the Genus Sphingobacterium (Bacteroidetes).";
RL Genome Announc. 1:e00598-13(2013).
CC -!- SIMILARITY: Belongs to the bacterial solute-binding protein 2 family.
CC {ECO:0000256|ARBA:ARBA00007639}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:ERJ59904.1}.
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DR EMBL; ATDL01000012; ERJ59904.1; -; Genomic_DNA.
DR RefSeq; WP_021069723.1; NZ_ATDL01000012.1.
DR AlphaFoldDB; U2J4M5; -.
DR STRING; 1346330.M472_14120; -.
DR PATRIC; fig|1346330.5.peg.1541; -.
DR eggNOG; COG0745; Bacteria.
DR eggNOG; COG1879; Bacteria.
DR OrthoDB; 9809670at2; -.
DR Proteomes; UP000016584; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0030246; F:carbohydrate binding; IEA:UniProt.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR CDD; cd06308; PBP1_sensor_kinase-like; 1.
DR Gene3D; 3.40.50.2300; -; 3.
DR Gene3D; 3.30.565.10; Histidine kinase-like ATPase, C-terminal domain; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 2.
DR InterPro; IPR011006; CheY-like_superfamily.
DR InterPro; IPR036890; HATPase_C_sf.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR018060; HTH_AraC.
DR InterPro; IPR028082; Peripla_BP_I.
DR InterPro; IPR025997; SBP_2_dom.
DR InterPro; IPR020449; Tscrpt_reg_HTH_AraC-type.
DR PANTHER; PTHR46847; D-ALLOSE-BINDING PERIPLASMIC PROTEIN-RELATED; 1.
DR PANTHER; PTHR46847:SF1; D-ALLOSE-BINDING PERIPLASMIC PROTEIN-RELATED; 1.
DR Pfam; PF12833; HTH_18; 1.
DR Pfam; PF13407; Peripla_BP_4; 1.
DR PRINTS; PR00032; HTHARAC.
DR SMART; SM00342; HTH_ARAC; 1.
DR SUPFAM; SSF52172; CheY-like; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 2.
DR SUPFAM; SSF53822; Periplasmic binding protein-like I; 1.
DR PROSITE; PS01124; HTH_ARAC_FAMILY_2; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000016584};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 348..367
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 798..896
FT /note="HTH araC/xylS-type"
FT /evidence="ECO:0000259|PROSITE:PS01124"
FT COILED 374..408
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 900 AA; 104093 MW; CF5DAD2478C9BBFA CRC64;
MNLNWICRLS LFSFFLLIGC TDSKKNQSYH IVFSQCVLDD AWRKEMLEEM QRELSFYPHV
DFTLYDADGS SAKQIQQIEH ILQKPIDLLI VSPNESEPLA PVVDRTYRQG VPVIVVDRKT
STEHYNSYVG ANNYQVGKLA SLVITQDNTD NNLRGKVIYI TGLTNSSASI EREKGFTDGL
KEYISNDNLI RLVGNWQPES APTALRNLDR HTIEQADYIF CFNDPMAFAC SQYLDSLQLA
NKPRIIGVDG LYGPKNGLNH VINKSLFATI HYPTGGKETI RTAMAILTKQ EYQRNIDLGT
MIIDSQNVHL LNDLEKKVSD QYADIDRQQI ILNKLKGINK LESIKSNFFL VLLIFSIIAL
GLILYILRNL KTSKATISKN NETISAQNEK LENLYSELSD NFREKQNLFK NLTYSLSNPL
ALQNALLKDL NKKGYSYSIE QTRNINNLQN TTNRLHNIFQ DIKNLENIHK NENLHVEETD
FGELLRNALY SLNSLLVEKR INFKVENHMD HNHILISKVW MERALFNFIE FLIKNMPEEG
SLRFKLSNTI NERRISFQAI AGPFSSSALD RSKLQEELRL GVSISFFQDV IKQHLGEINF
DFDHNFITFD IAFSQLELKD ELVNDNEADP YLAQLTTPTV RENFLREKPS LIYIDNDPDW
QALIYDTFHN SYNVLPAHSF HEAKDLLKTY AVEVIIGEYV INQTPYTNFL KVLQDSSEYN
NIPFIMFSTN DAAQEEAYDT GCDLFIHKST SIQLLHKATN NVLTQRRRLI YKLQHFGPKD
IQLIENSNER ENYRPFVKEV KRVMEEHIAD NTFTISDLAK RFNLSRVHFY NRFNEAFETS
PADYLLNLRL KKAMNLLLTP LTISEIAFQC GFSSPGYFTK VFSQKYHQSP KAYQRMHSKR
//
