ID   V4JPE0_EUTSA            Unreviewed;       410 AA.
AC   V4JPE0;
DT   22-JAN-2014, integrated into UniProtKB/TrEMBL.
DT   22-JAN-2014, sequence version 1.
DT   27-MAR-2024, entry version 45.
DE   RecName: Full=HTH La-type RNA-binding domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=EUTSA_v10018639mg {ECO:0000313|EMBL:ESQ27000.1};
OS   Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema.
OX   NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ27000.1, ECO:0000313|Proteomes:UP000030689};
RN   [1] {ECO:0000313|EMBL:ESQ27000.1, ECO:0000313|Proteomes:UP000030689}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=23518688; DOI=10.3389/fpls.2013.00046;
RA   Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., Jenkins J.,
RA   Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A.,
RA   Mitchell-Olds T., Schumaker K.S., Wang X.;
RT   "The Reference Genome of the Halophytic Plant Eutrema salsugineum.";
RL   Front. Plant Sci. 4:46-46(2013).
CC   -!- SUBCELLULAR LOCATION: Nucleus, nucleoplasm
CC       {ECO:0000256|ARBA:ARBA00004642}.
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DR   EMBL; KI517953; ESQ27000.1; -; Genomic_DNA.
DR   RefSeq; XP_006389714.1; XM_006389652.1.
DR   AlphaFoldDB; V4JPE0; -.
DR   STRING; 72664.V4JPE0; -.
DR   EnsemblPlants; ESQ27000; ESQ27000; EUTSA_v10018639mg.
DR   GeneID; 18008249; -.
DR   Gramene; ESQ27000; ESQ27000; EUTSA_v10018639mg.
DR   KEGG; eus:EUTSA_v10018639mg; -.
DR   eggNOG; KOG0118; Eukaryota.
DR   OMA; EMEREVW; -.
DR   OrthoDB; 5477115at2759; -.
DR   Proteomes; UP000030689; Unassembled WGS sequence.
DR   GO; GO:0005634; C:nucleus; IEA:InterPro.
DR   GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-UniRule.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR   CDD; cd08030; LA_like_plant; 1.
DR   CDD; cd12291; RRM1_La; 1.
DR   Gene3D; 3.30.70.330; -; 2.
DR   Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR   InterPro; IPR045180; La_dom_prot.
DR   InterPro; IPR006630; La_HTH.
DR   InterPro; IPR014886; La_xRRM.
DR   InterPro; IPR002344; Lupus_La.
DR   InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR   InterPro; IPR035979; RBD_domain_sf.
DR   InterPro; IPR000504; RRM_dom.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR036390; WH_DNA-bd_sf.
DR   PANTHER; PTHR22792:SF140; LA-RELATED PROTEIN 7; 1.
DR   PANTHER; PTHR22792; LUPUS LA PROTEIN-RELATED; 1.
DR   Pfam; PF05383; La; 1.
DR   Pfam; PF00076; RRM_1; 1.
DR   Pfam; PF08777; RRM_3; 1.
DR   PRINTS; PR00302; LUPUSLA.
DR   SMART; SM00715; LA; 1.
DR   SUPFAM; SSF54928; RNA-binding domain, RBD; 2.
DR   SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR   PROSITE; PS50961; HTH_LA; 1.
DR   PROSITE; PS50102; RRM; 1.
DR   PROSITE; PS51939; XRRM; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000030689};
KW   RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW   ProRule:PRU00332}.
FT   DOMAIN          2..105
FT                   /note="HTH La-type RNA-binding"
FT                   /evidence="ECO:0000259|PROSITE:PS50961"
FT   DOMAIN          114..197
FT                   /note="RRM"
FT                   /evidence="ECO:0000259|PROSITE:PS50102"
FT   DOMAIN          291..410
FT                   /note="XRRM"
FT                   /evidence="ECO:0000259|PROSITE:PS51939"
FT   REGION          242..269
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          381..410
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   410 AA;  45418 MW;  31004C68765C13DE CRC64;
     MASFNDETAN KLITQVEFYF SDSNLPRDDF LRKEVTKSKD GLVSLPLVCS FSRMRNLLGL
     GNIRREDIPK RIVEGVANLL RTSDFLKVSA NGLRIGRGTK LSKPEEVLEQ VHRRTVAASP
     FEYSIKMEDV ASFFSQYAKV NSVRLPHHIG DKRHFSGTAL IEFSSEQDAE AILRQTLVYA
     GADLVLIPKI DFDRRRETAI KTLGKSGSSL TDSSHNEFRR GHVVQFTLKR IANGVINKEK
     PKSLENEIRG KEDMAGNAEK LQGKDKKKES RDLVADNSCA SLCTESGEKV DKADQLVVPP
     SVNSDSVGPE VLKDVFQRFG SVKHIECSGG LDSGYVCFID SETAMKARAA AQFVGGLVVK
     NKFSVALEAV NGEMEREVWK RLSSAEREGG GKEEDDKKEK TKAKKAGKEP
//