ID V4JVA9_EUTSA Unreviewed; 1321 AA.
AC V4JVA9;
DT 22-JAN-2014, integrated into UniProtKB/TrEMBL.
DT 22-JAN-2014, sequence version 1.
DT 27-MAR-2024, entry version 38.
DE RecName: Full=RING-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=EUTSA_v10023220mg {ECO:0000313|EMBL:ESQ29335.1};
OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema.
OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ29335.1, ECO:0000313|Proteomes:UP000030689};
RN [1] {ECO:0000313|EMBL:ESQ29335.1, ECO:0000313|Proteomes:UP000030689}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23518688; DOI=10.3389/fpls.2013.00046;
RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., Jenkins J.,
RA Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A.,
RA Mitchell-Olds T., Schumaker K.S., Wang X.;
RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum.";
RL Front. Plant Sci. 4:46-46(2013).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.
CC {ECO:0000256|ARBA:ARBA00008438}.
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DR EMBL; KI517881; ESQ29335.1; -; Genomic_DNA.
DR RefSeq; XP_006392049.1; XM_006391987.1.
DR STRING; 72664.V4JVA9; -.
DR EnsemblPlants; ESQ29335; ESQ29335; EUTSA_v10023220mg.
DR Gramene; ESQ29335; ESQ29335; EUTSA_v10023220mg.
DR KEGG; eus:EUTSA_v10023220mg; -.
DR eggNOG; KOG1001; Eukaryota.
DR OMA; VSECQSD; -.
DR Proteomes; UP000030689; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:InterPro.
DR GO; GO:0009553; P:embryo sac development; IEA:EnsemblPlants.
DR CDD; cd18008; DEXDc_SHPRH-like; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 3.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR049730; SNF2/RAD54-like_C.
DR InterPro; IPR000330; SNF2_N.
DR InterPro; IPR018957; Znf_C3HC4_RING-type.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR45626:SF16; SNF2 DOMAIN-CONTAINING PROTEIN _ HELICASE DOMAIN-CONTAINING PROTEIN _ ZINC FINGER PROTEIN-LIKE PROTEIN; 1.
DR PANTHER; PTHR45626; TRANSCRIPTION TERMINATION FACTOR 2-RELATED; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR Pfam; PF00097; zf-C3HC4; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000030689};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175}.
FT DOMAIN 630..897
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 1041..1080
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 1156..1315
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 1..30
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 43..72
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 806..830
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 52..72
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 809..828
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1321 AA; 145214 MW; 59F43E11713D778C CRC64;
MGEEGSVFGL GDGFQPDDCD DGFGFEDDDD DLTIDIETII RILDEKPDSA EGSQENSSPV
GSSAGELKNP QLQNGSQMVD WFPSRDSYSL RASHLGTGVS GSFDEHVKVD PALSPSPAHT
CSASLKDWFS LSQEEQPVET CGVAQSEMTS CSISSSSVDR YNTSFSDHGG NVAFNPVNSD
AETVSKQADK IIDSKFTSCS PATYFDEVHG YGTGLGAIHN SSVMSGFCHN SNSLSDGVDN
CLSSAQNCDN TSGASLSEHQ DFAFQFFPSK EEAVNDVDSG VSECQSDGAT RMIFDRHGRL
DNGSLERKTD VDFSSARGIS FKRESYPSVS PACAKPYNSF DNRLADNALD RPDNCSSSFQ
DNEAIRVKVK PEVESEKVVY SSVPEEDIVM DAVYAPGETN HWWSGTSSCS VSYQADVEKG
FSFMAPQAGF PSQDNGNSNK FYDSKACLQY VAADPSPATQ INEYLDSLTQ QGDQEHVQPR
SIESNFSNGS FESVQSLSSE CISDSDDDSD IYIIETNGQF ANPHRPLAMK KPVVSSEYST
LGHTFNQSAN SHRPLAMKMP VVSSEYSTVG HSFNHSGGLK LQSNKENMIF QAALQDLSLP
NAEASPPDGV LAVPLMRHQR IALSWMAQKE TSGFPCSGGI LADDQGLGKT ISTIALILKE
RSTPSRACEE SIKKEFFDLE SEGGECASLN SNGMSEEFDH SQLLFNEDKT DGTSLGKMRG
RPAAGTLVVC PTSVLRQWAD ELRKKVTSEA NLSVLVYHGS SRTKDPQELA KYDVVVTTYS
IVSMEDEEKV DVHDGGVTAA GFCSNKKRKY PPDSQKKGSK KKKQVDRASV EAQSGPLAKV
SWFRVVLDEA QSIKNYKTQV ARACWGLRAK RRWCLSGTPI QNSIEDLYSY FRFLKYDPYS
SYVLFCNTIK NPIARTPVKG YQKLQAILKT VMLRRTKGSL LDGKPIISLP PKSIELRKVD
FTEEERDFYS NLERESRSQF QEYKEAGTVK QNYVNILLML LRLRQACDHP LLVKGEYSFT
WESSLELAKK QNFSEASLAI CGTCNDAPED AVVSVCGHVF CKQCFYECLT GDNNRCPFAN
CNVRLTAMPS MHDGASSVKV ETVDPCSEGL AYESSKIKAA LEILQSLARP QDLTDMNQIS
QNGEDSIKPV KNEGSGVDGP VKVVGEKAIV FSQWTKMLDL LEASLISSHI QYRRLDGTMS
VAARDKAVQD FNTLPEVSVM IMSLKAASLG LNMVAACHVL MLDLWWNPTT EDQAIDRAHR
IGQTRPVTVV RFTVKDTVED RILALQQKKR MMVASAFGED EKGSRQSHLT VEDLNYLFMA
D
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