ID V4M9N2_EUTSA Unreviewed; 713 AA.
AC V4M9N2;
DT 22-JAN-2014, integrated into UniProtKB/TrEMBL.
DT 22-JAN-2014, sequence version 1.
DT 27-MAR-2024, entry version 43.
DE RecName: Full=Homeobox domain-containing protein {ECO:0008006|Google:ProtNLM};
DE Flags: Fragment;
GN ORFNames=EUTSA_v10017809mg {ECO:0000313|EMBL:ESQ51822.1};
OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema.
OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ51822.1, ECO:0000313|Proteomes:UP000030689};
RN [1] {ECO:0000313|EMBL:ESQ51822.1, ECO:0000313|Proteomes:UP000030689}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23518688; DOI=10.3389/fpls.2013.00046;
RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., Jenkins J.,
RA Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A.,
RA Mitchell-Olds T., Schumaker K.S., Wang X.;
RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum.";
RL Front. Plant Sci. 4:46-46(2013).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|PROSITE-ProRule:PRU00108, ECO:0000256|RuleBase:RU000682}.
CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class IV subfamily.
CC {ECO:0000256|ARBA:ARBA00006789}.
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DR EMBL; KI517385; ESQ51822.1; -; Genomic_DNA.
DR RefSeq; XP_006410369.1; XM_006410306.1.
DR AlphaFoldDB; V4M9N2; -.
DR STRING; 72664.V4M9N2; -.
DR EnsemblPlants; ESQ51822; ESQ51822; EUTSA_v10017809mg.
DR Gramene; ESQ51822; ESQ51822; EUTSA_v10017809mg.
DR KEGG; eus:EUTSA_v10017809mg; -.
DR eggNOG; ENOG502QU3P; Eukaryota.
DR OMA; ANNRTNW; -.
DR Proteomes; UP000030689; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IEA:InterPro.
DR GO; GO:0008289; F:lipid binding; IEA:InterPro.
DR GO; GO:0030154; P:cell differentiation; IEA:EnsemblPlants.
DR GO; GO:0048825; P:cotyledon development; IEA:EnsemblPlants.
DR CDD; cd00086; homeodomain; 1.
DR CDD; cd08875; START_ArGLABRA2_like; 1.
DR Gene3D; 3.30.530.20; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR InterPro; IPR042160; GLABRA2/ANL2/PDF2/ATML1-like.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017970; Homeobox_CS.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR023393; START-like_dom_sf.
DR InterPro; IPR002913; START_lipid-bd_dom.
DR PANTHER; PTHR45654:SF55; HOMEOBOX DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR45654; HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR Pfam; PF01852; START; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM00234; START; 1.
DR SUPFAM; SSF55961; Bet v1-like; 2.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS00027; HOMEOBOX_1; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
DR PROSITE; PS50848; START; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PROSITE-
KW ProRule:PRU00108};
KW Homeobox {ECO:0000256|ARBA:ARBA00023155, ECO:0000256|PROSITE-
KW ProRule:PRU00108};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|PROSITE-
KW ProRule:PRU00108}; Reference proteome {ECO:0000313|Proteomes:UP000030689}.
FT DOMAIN 66..126
FT /note="Homeobox"
FT /evidence="ECO:0000259|PROSITE:PS50071"
FT DOMAIN 242..476
FT /note="START"
FT /evidence="ECO:0000259|PROSITE:PS50848"
FT DNA_BIND 68..127
FT /note="Homeobox"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00108"
FT REGION 1..77
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 125..155
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 19..57
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 713
FT /evidence="ECO:0000313|EMBL:ESQ51822.1"
SQ SEQUENCE 713 AA; 79748 MW; C95CE435AF8EDAFF CRC64;
MYQPDMLVPV DTNKNGDDDN NENNNNNENN NNNMDGQGDT SFGDEEFDST NTSETQEDGS
EQDPRSNKRK RYHRHTQHQI QEMEAFFKEC PHPDDKQRKE LSRQLGLDHL QIKFWFQNKR
TQNKNHLERH ENSQLRSENN RLRNENHQYR EAIANALCPK CGGHTAIGEM SFEEHHLRLE
NAGLAQEIQQ LSAVATKYAG RPRYALMAPP VPARPSEPGM ATNGRQVHES IQNHLRSIIG
VKDADKPLII ELAFRAMDEL IAMAQVGEPL WKGGVNGTSL ALDLDEYTRT FQNGLGPRLN
GFRTEASRET AVVYMNHMNI VKRLMDVNLW STMFAGMVAR AMTHEVLYAG VNGTFDGTLH
LMTVEYQILS PLVSTRESYF LRYCRQQGEG LWAVVDVSID HLIPNLELRC RRRPSGCLIQ
QIQNGFSKVT WVEHVELDDR GAIIHNLYKQ YISSGQALAA NRWVTTLDRQ SERLACMMAT
NIPSIEPGAL TNQSKHNILK LAERMGRSFF SGVTASTADL WCNLSGYAGD SIRLMTRTSV
NDPGRPPGVI LCAATSFWVP VPPSTVFDFL RDENTRIHWD VLSSAGNVQK LSQIANGRDS
RNCVSILQGP KTIEKNMIIV QETSTDPAAS FVISAPIDVS AMDLVFKGGD SDYVPMLPSG
FAILPDGMAR PGREGGSLLS VAFQILVESV HSAKLTFSSV ATIENLVLST VHK
//
