ID V7CPJ6_PHAVU Unreviewed; 1304 AA.
AC V7CPJ6;
DT 19-FEB-2014, integrated into UniProtKB/TrEMBL.
DT 19-FEB-2014, sequence version 1.
DT 27-MAR-2024, entry version 46.
DE RecName: Full=Helicase-like transcription factor CHR28 {ECO:0008006|Google:ProtNLM};
GN ORFNames=PHAVU_002G224600g {ECO:0000313|EMBL:ESW31273.1};
OS Phaseolus vulgaris (Kidney bean) (French bean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus.
OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW31273.1, ECO:0000313|Proteomes:UP000000226};
RN [1] {ECO:0000313|Proteomes:UP000000226}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. G19833 {ECO:0000313|Proteomes:UP000000226};
RX PubMed=24908249; DOI=10.1038/ng.3008;
RA Schmutz J., McClean P.E., Mamidi S., Wu G.A., Cannon S.B., Grimwood J.,
RA Jenkins J., Shu S., Song Q., Chavarro C., Torres-Torres M., Geffroy V.,
RA Moghaddam S.M., Gao D., Abernathy B., Barry K., Blair M., Brick M.A.,
RA Chovatia M., Gepts P., Goodstein D.M., Gonzales M., Hellsten U.,
RA Hyten D.L., Jia G., Kelly J.D., Kudrna D., Lee R., Richard M.M.,
RA Miklas P.N., Osorno J.M., Rodrigues J., Thareau V., Urrea C.A., Wang M.,
RA Yu Y., Zhang M., Wing R.A., Cregan P.B., Rokhsar D.S., Jackson S.A.;
RT "A reference genome for common bean and genome-wide analysis of dual
RT domestications.";
RL Nat. Genet. 46:707-713(2014).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.
CC {ECO:0000256|ARBA:ARBA00008438}.
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DR EMBL; CM002289; ESW31273.1; -; Genomic_DNA.
DR RefSeq; XP_007159279.1; XM_007159217.1.
DR STRING; 3885.V7CPJ6; -.
DR EnsemblPlants; ESW31273; ESW31273; PHAVU_002G224600g.
DR GeneID; 18638785; -.
DR Gramene; ESW31273; ESW31273; PHAVU_002G224600g.
DR KEGG; pvu:PHAVU_002G224600g; -.
DR eggNOG; KOG1001; Eukaryota.
DR OMA; YQNNFHN; -.
DR OrthoDB; 11932at2759; -.
DR Proteomes; UP000000226; Chromosome 2.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd18008; DEXDc_SHPRH-like; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 3.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR049730; SNF2/RAD54-like_C.
DR InterPro; IPR000330; SNF2_N.
DR InterPro; IPR018957; Znf_C3HC4_RING-type.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR45626:SF16; SNF2 DOMAIN-CONTAINING PROTEIN _ HELICASE DOMAIN-CONTAINING PROTEIN _ ZINC FINGER PROTEIN-LIKE PROTEIN; 1.
DR PANTHER; PTHR45626; TRANSCRIPTION TERMINATION FACTOR 2-RELATED; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR Pfam; PF00097; zf-C3HC4; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000000226};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 565..833
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 987..1026
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 1140..1299
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 42..64
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 119..149
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 722..766
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1094..1130
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 48..64
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 724..745
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1304 AA; 144187 MW; A191047CEEDE7847 CRC64;
MADEEVDFSK LFPGDDGDDD MFYIDIHTVQ KVLDEDDDCD FLEKFPEDSS SKNVSPSESG
THDTFQIQNG SQVLEEPQFS RLGFTDSVTS FSPFCSDASD SGVRGSVGVS DSVANSWLDC
EPENQGPRSQ ACSSPNAFPG NLSNSLSQGE SDEVFCTEKT RVSKHEVPAC SAESSLPEAQ
SKNISICGDN LNPSPWNGEN EIQFKYLRED VEFENTSISS IVDNDDVNIE GYVEDTIGGV
SGQQENDSCT SFEAFMDADI SLHVATSSDS TIGQDDEMMN NMKAKNVDLN ADITCMSSGM
PSNTTGWMSF LDLSDNVYPS FHSSKGNFDD MSSLSLSACD SYMPYGDHYQ NNFHCEDAKF
NVGQSVKQTP GIFSSVGCQA YQFFEIEDNY AVIPGISNQN QDSNGGIASF QGNVDNLNLQ
AANISLPHAH ALITSEKQFG SVKREGGVQH KLVDSHLSKG KIKNFHVEED PDVCIIEDIS
HPAPTSRSTI TGNFSSISQS SGYANPQSYM VGSTKLKACD ERNILRVALQ DLSQPKSELN
LPEGLLAVPL LRHQRIALSW MVQKEASSLY CSGGILADDQ GLGKTVSTIA LILKERPPLL
NGCTNAHKSE LDLNLDVDDD VLPQNGRVKE ESNICEDKSS RYPVKSMNLL NQAKGRPSAG
TLIVCPTSVL RQWAEELRSK VTSQTNLSVL VYHGSNRTKD PYEVAKYDVV LTTYSIVSME
VPKQPSADKD DEEKGNVEDQ AVSSRKRKCP SNSSKGGKKR SDGTVPEANA RPLAKVAWFR
VVLDEAQSIK NHKTQVARAC WGLRAKRRWC LSGTPIQNAI DDLYSYFRFL RYDPYDVYIS
FCSKIKNPIS RNPTNGYRKL QAVLKTIMLR RTKGTLLDGE PIISLPPKYI ELKKVDFSME
ERDFYYKLEA DSRAQFQEYA DAGTVKQNYV NILLMLLRLR QACDHPLLVK RYNSNSLWRS
SVEMAKTLPQ EKQISLLQCL EASLALCSIC NDPPEDAFVS VCGHVFCNQC ICEHLTGDDN
QCPAANCKNP LSTSRVFSKA TLNSCLSDQG CDNSPGCSGS EAEEFEPWSQ SQPYESSKTK
AALEVLKSLC KPQSYTSKSS SEHSTFRKDN DCPGNPSNAD NGKSFIDSHE HQNLSDDNRC
HGDSVTVVGD KAIVFSQWTR MLDLLEACLK KSSINYRRLD GTMSVVARDK AVKDFNTLPE
VSVIIMSLKA ASLGLNLVVA SHVLMLDLWW NPTTEDQAID RAHRIGQTRP VSVLRLTVKD
TVEDRILALQ QKKRMMVASA FGEDGTGDRQ SRLTVDDLKY LFMM
//
