ID W0J7G8_9BACT Unreviewed; 563 AA.
AC W0J7G8;
DT 19-MAR-2014, integrated into UniProtKB/TrEMBL.
DT 19-MAR-2014, sequence version 1.
DT 27-MAR-2024, entry version 43.
DE RecName: Full=RNA polymerase subunit sigma-24 {ECO:0008006|Google:ProtNLM};
GN ORFNames=OPIT5_12100 {ECO:0000313|EMBL:AHF94325.1};
OS Opitutaceae bacterium TAV5.
OC Bacteria; Verrucomicrobiota; Opitutae; Opitutales; Opitutaceae.
OX NCBI_TaxID=794903 {ECO:0000313|EMBL:AHF94325.1, ECO:0000313|Proteomes:UP000003813};
RN [1] {ECO:0000313|EMBL:AHF94325.1, ECO:0000313|Proteomes:UP000003813}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TAV5 {ECO:0000313|EMBL:AHF94325.1};
RX PubMed=25744998;
RA Kotak M., Isanapong J., Goodwin L., Bruce D., Chen A., Han C.S.,
RA Huntemann M., Ivanova N., Land M.L., Nolan M., Pati A., Woyke T.,
RA Rodrigues J.L.;
RT "Complete Genome Sequence of the Opitutaceae Bacterium Strain TAV5, a
RT Potential Facultative Methylotroph of the Wood-Feeding Termite
RT Reticulitermes flavipes.";
RL Genome Announc. 3:0-0(2015).
CC -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC {ECO:0000256|ARBA:ARBA00010641}.
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DR EMBL; CP007053; AHF94325.1; -; Genomic_DNA.
DR AlphaFoldDB; W0J7G8; -.
DR STRING; 794903.OPIT5_12100; -.
DR KEGG; obt:OPIT5_12100; -.
DR eggNOG; COG1595; Bacteria.
DR HOGENOM; CLU_531917_0_0_0; -.
DR OrthoDB; 191945at2; -.
DR Proteomes; UP000003813; Chromosome.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.10.1740.10; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR039425; RNA_pol_sigma-70-like.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR43133:SF51; ECF RNA POLYMERASE SIGMA-E FACTOR; 1.
DR PANTHER; PTHR43133; RNA POLYMERASE ECF-TYPE SIGMA FACTO; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000003813};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 194..213
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 225..247
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 254..275
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 23..89
FT /note="RNA polymerase sigma-70 region 2"
FT /evidence="ECO:0000259|Pfam:PF04542"
FT DOMAIN 140..188
FT /note="RNA polymerase sigma-70 region 4"
FT /evidence="ECO:0000259|Pfam:PF04545"
FT REGION 92..113
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 296..323
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 563 AA; 61129 MW; F6BB3C04147514B8 CRC64;
MPDDAALLCR YAETRAEDAF AELVRRHLAF VYSAALRRTG GDAHRAEDVT QIVFTDLARK
ARALSRHPTL AGWLHTSTRY AAASVTRSEY RRQHREQEAS AMADNDTATT PHTLHPAIAD
SASATDADWQ QLRPVIDATL DRLDARDREI ILLRFFGNHT FAAIGEKLRL TDDAVRKRAD
RALEKLRRHL ARRGITSTAS ALGLAFTTHA TVATPASLAA GVTNAALSAA TATTATTAAT
LVPLALMTKL KTGALGLALA AAVTTAGSAT LAIVVTQQHA QLTRLRAAIA AADPELPRLR
ARLDAAERDR DAALRKLAEA RSARATPPPP PPPVRTLADK FSAEGKALDA NPEYAAFQRR
QSRLSVQKDY GNFFDQLDLD RETRDRLKEI LADSRDEVVR SAKEAGYQGR SLPDAERREI
LSVFDEKIRE VLGDAAFDAL EEYRIINGVS GYGDSLAAKN IGLALADAGQ PVDPGQQARI
SRYIYEEIYA KKPPAPDSLA GALAEAAATT GGLSADEHAV LARAAADALL TPAQRELIRR
YFADEREYRL LIWKTRESLS PSP
//
