ID W1NDW9_AMBTC Unreviewed; 939 AA.
AC W1NDW9;
DT 19-MAR-2014, integrated into UniProtKB/TrEMBL.
DT 19-MAR-2014, sequence version 1.
DT 27-MAR-2024, entry version 51.
DE RecName: Full=polyribonucleotide nucleotidyltransferase {ECO:0000256|ARBA:ARBA00012416};
DE EC=2.7.7.8 {ECO:0000256|ARBA:ARBA00012416};
DE AltName: Full=Polynucleotide phosphorylase 1 {ECO:0000256|ARBA:ARBA00031451};
GN ORFNames=AMTR_s00004p00095690 {ECO:0000313|EMBL:ERM93561.1};
OS Amborella trichopoda.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella.
OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERM93561.1, ECO:0000313|Proteomes:UP000017836};
RN [1] {ECO:0000313|Proteomes:UP000017836}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=24357323;
RG Amborella Genome Project;
RT "The Amborella genome and the evolution of flowering plants.";
RL Science 342:1241089-1241089(2013).
CC -!- SIMILARITY: Belongs to the polyribonucleotide nucleotidyltransferase
CC family. {ECO:0000256|ARBA:ARBA00007404}.
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DR EMBL; KI397628; ERM93561.1; -; Genomic_DNA.
DR RefSeq; XP_006826324.1; XM_006826261.2.
DR AlphaFoldDB; W1NDW9; -.
DR STRING; 13333.W1NDW9; -.
DR EnsemblPlants; ERM93561; ERM93561; AMTR_s00004p00095690.
DR GeneID; 18421647; -.
DR Gramene; ERM93561; ERM93561; AMTR_s00004p00095690.
DR KEGG; atr:18421647; -.
DR eggNOG; KOG1067; Eukaryota.
DR HOGENOM; CLU_004217_2_0_1; -.
DR OMA; RFMFHYN; -.
DR OrthoDB; 937144at2759; -.
DR Proteomes; UP000017836; Unassembled WGS sequence.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IBA:GO_Central.
DR GO; GO:0000175; F:3'-5'-RNA exonuclease activity; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR GO; GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IBA:GO_Central.
DR GO; GO:0016120; P:carotene biosynthetic process; IEA:EnsemblPlants.
DR GO; GO:0016036; P:cellular response to phosphate starvation; IEA:EnsemblPlants.
DR GO; GO:0015995; P:chlorophyll biosynthetic process; IEA:EnsemblPlants.
DR GO; GO:0031425; P:chloroplast RNA processing; IEA:EnsemblPlants.
DR GO; GO:0000958; P:mitochondrial mRNA catabolic process; IBA:GO_Central.
DR GO; GO:0000965; P:mitochondrial RNA 3'-end processing; IBA:GO_Central.
DR GO; GO:0010323; P:negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; IEA:EnsemblPlants.
DR GO; GO:0016123; P:xanthophyll biosynthetic process; IEA:EnsemblPlants.
DR CDD; cd02393; KH-I_PNPase; 1.
DR CDD; cd11364; RNase_PH_PNPase_2; 1.
DR CDD; cd04472; S1_PNPase; 1.
DR Gene3D; 3.30.230.70; GHMP Kinase, N-terminal domain; 2.
DR Gene3D; 3.30.1370.10; K Homology domain, type 1; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR HAMAP; MF_01595; PNPase; 1.
DR InterPro; IPR001247; ExoRNase_PH_dom1.
DR InterPro; IPR015847; ExoRNase_PH_dom2.
DR InterPro; IPR036345; ExoRNase_PH_dom2_sf.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR004088; KH_dom_type_1.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR012162; PNPase.
DR InterPro; IPR027408; PNPase/RNase_PH_dom_sf.
DR InterPro; IPR020568; Ribosomal_Su5_D2-typ_SF.
DR InterPro; IPR003029; S1_domain.
DR NCBIfam; TIGR03591; polynuc_phos; 1.
DR PANTHER; PTHR11252; POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; 1.
DR PANTHER; PTHR11252:SF17; POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC; 1.
DR Pfam; PF00013; KH_1; 1.
DR Pfam; PF01138; RNase_PH; 2.
DR Pfam; PF03725; RNase_PH_C; 2.
DR Pfam; PF00575; S1; 1.
DR SMART; SM00322; KH; 1.
DR SMART; SM00316; S1; 1.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR SUPFAM; SSF55666; Ribonuclease PH domain 2-like; 2.
DR SUPFAM; SSF54211; Ribosomal protein S5 domain 2-like; 2.
DR PROSITE; PS50084; KH_TYPE_1; 1.
DR PROSITE; PS50126; S1; 1.
PE 3: Inferred from homology;
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000017836};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00117}; Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 764..833
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT REGION 54..81
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 831..894
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 899..918
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 55..81
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 845..865
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 866..880
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 939 AA; 101805 MW; 5099C9C1771769A4 CRC64;
MVRSIHCSHG GRPPQILSLS LSSKTLTFPL SLPSSLTTSF PCLSLKLRPR KSRALAGTSK
SNNSLKTVQC SSSDSNPRNV DESNYMPQPF SVKIPVGDRH ILVETGLIGR QASGAVTVTD
GETIIYTSVC LADVPSEPSD FFPLFVNYQE RFSAAGRTSG GFFKREGRAR DHELLICRLI
DRPLRPTMLK GFYHETQILS WVLSYDGLHS PDALAITAAG IAVALSEVPN SKAVTGVRVG
LISDQYIVNP TTKQMEESEL DLVLAGTEDA ILMIEGYCNF LSEDKLLKAV EIGQEAVRAM
CKEVEALVKE CGNPKMLEAI KLPPPELYKN VEEIAGNELV KVLQINRKIP RIKALSALEE
SVLTVLAEKG LLVKEGTSVV SEVIPEIDED EDEDEVVIVD GEVDEGDFHI KPVSRKPVTL
LFSEVDVKLV FKEVTSKFLR RRIVEGGKRS DGRTPSELRS IHSRCRLLPR AHGSALFTRG
ETQSLAVVTL GDRQMAQRLD NLIDVDELKH FYLQYSFPPS CVGEVGRIGA PSRREIGHGM
LAERALEPIL PSDEDFPYTI RVESTITESN GSSSMASVCG GCLALLDAGV PVKCPVAGVA
MGMVFDTKEF GGDGTPLILS DISGSEDASG DMDFKVAGTE DGITAFQMDI KVGGITIPVM
KQALLQAKEG RTHILAEMLK CTPPPSKKLS KYAPLIHVMK VKPEKVNIII GSGGKKVKSI
IEESGVEAID MQDDGVVKIT AKDMTSLEKS KAIITNLTMV PTVGDVYRNC EIKSIAPYGV
FVEIAPGREG LCHISELSSS WLPNAEDIFK VGDRVDVKLI EINEKGHLRL SRRALLPDPG
PDKSSAKPKS SSPSKEYSVA QNASPEKGTK EEENKEEASS RASQPAKVST PEKFIRKLVA
AKDGVNVNKE KQTKSGGKTI TSAMAKDEAT LVNGEAKVG
//
