ID W2YVN1_PHYPR Unreviewed; 617 AA.
AC W2YVN1;
DT 19-MAR-2014, integrated into UniProtKB/TrEMBL.
DT 19-MAR-2014, sequence version 1.
DT 13-SEP-2023, entry version 24.
DE RecName: Full=Nucleoporin protein Ndc1-Nup {ECO:0008006|Google:ProtNLM};
GN ORFNames=F442_14253 {ECO:0000313|EMBL:ETP38004.1};
OS Phytophthora parasitica P10297.
OC Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporales; Peronosporaceae;
OC Phytophthora.
OX NCBI_TaxID=1317064 {ECO:0000313|EMBL:ETP38004.1, ECO:0000313|Proteomes:UP000018948};
RN [1] {ECO:0000313|EMBL:ETP38004.1, ECO:0000313|Proteomes:UP000018948}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=P10297 {ECO:0000313|EMBL:ETP38004.1,
RC ECO:0000313|Proteomes:UP000018948};
RG The Broad Institute Genomics Platform;
RA Russ C., Tyler B., Panabieres F., Shan W., Tripathy S., Grunwald N.,
RA Machado M., Johnson C.S., Walker B., Young S.K., Zeng Q., Gargeya S.,
RA Fitzgerald M., Haas B., Abouelleil A., Allen A.W., Alvarado L.,
RA Arachchi H.M., Berlin A.M., Chapman S.B., Gainer-Dewar J., Goldberg J.,
RA Griggs A., Gujja S., Hansen M., Howarth C., Imamovic A., Ireland A.,
RA Larimer J., McCowan C., Murphy C., Pearson M., Poon T.W., Priest M.,
RA Roberts A., Saif S., Shea T., Sisk P., Sykes S., Wortman J., Nusbaum C.,
RA Birren B.;
RT "The Genome Sequence of Phytophthora parasitica P10297.";
RL Submitted (NOV-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-
CC pass membrane protein {ECO:0000256|ARBA:ARBA00004141}. Nucleus membrane
CC {ECO:0000256|ARBA:ARBA00004232}; Multi-pass membrane protein
CC {ECO:0000256|ARBA:ARBA00004232}. Nucleus, nuclear pore complex
CC {ECO:0000256|ARBA:ARBA00004567}.
CC -!- SIMILARITY: Belongs to the NDC1 family.
CC {ECO:0000256|ARBA:ARBA00005760}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:ETP38004.1}.
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DR EMBL; ANIY01002966; ETP38004.1; -; Genomic_DNA.
DR AlphaFoldDB; W2YVN1; -.
DR EnsemblProtists; ETP38004; ETP38004; F442_14253.
DR Proteomes; UP000018948; Unassembled WGS sequence.
DR GO; GO:0031965; C:nuclear membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0005643; C:nuclear pore; IEA:UniProtKB-SubCell.
DR GO; GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.
DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
DR InterPro; IPR019049; Nucleoporin_prot_Ndc1/Nup.
DR PANTHER; PTHR13269:SF6; NUCLEOPORIN NDC1; 1.
DR PANTHER; PTHR13269; UNCHARACTERIZED; 1.
DR Pfam; PF09531; Ndc1_Nup; 1.
PE 3: Inferred from homology;
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW mRNA transport {ECO:0000256|ARBA:ARBA00022816};
KW Nuclear pore complex {ECO:0000256|ARBA:ARBA00023132};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Protein transport {ECO:0000256|ARBA:ARBA00022927};
KW Reference proteome {ECO:0000313|Proteomes:UP000018948};
KW Translocation {ECO:0000256|ARBA:ARBA00023010};
KW Transmembrane {ECO:0000256|ARBA:ARBA00022692, ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|ARBA:ARBA00022989,
KW ECO:0000256|SAM:Phobius}; Transport {ECO:0000256|ARBA:ARBA00022448}.
FT TRANSMEM 45..66
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 72..95
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 137..157
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 163..184
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
SQ SEQUENCE 617 AA; 67879 MW; D02FF45686D7A83F CRC64;
MGFAHSLEVL YALLRLYASG AASSTSFSDV PYPHLQQRLQ QTLRAVALTA FGAVFIPLLL
LCLLPLLSPL EFPGFTAFLL VVASLWTAAV AHLTFRYALL PTPRRVETEP VRGGLQAAVC
AIVDAITRMR EQPQLPVLLL LCVIHSYVWK FVLYYGMASS AHVAADFGSF TIAGGLVAFV
SFVLMEKSLA EDPFVLDPRA AFVRAMQRDV VRAVRRGVLV YIVGRAWSWV FGGSEVDLGG
TESGFFSLHS SRVTFQITTS FLENLAILSA ASVFRILLFR ASHQVLGGAF GETKNLWDSL
ASVKPKEGDV VSALFATEVT TNPQHTTPLN KQYLQGLHKR MDAAVKKISD KKTPKAPADA
EDVEILDSLF KFENLLTGCK FDAAARETLF TSRDRWNALF STTTAVVDGF TLMLQLLNTL
PDRKGDAGDN SSTGALALER SVAALLRFLN SQQDAHPLLL LQQYPHLANL RISSSSVKSS
IRFFVESKLQ LAIRRYLVEE ARRRVFQRVR VVCAAESLLC HLVSVSREED KQGYVQHTVP
AVVSSLLECR NALDAYMETC LKESSTTDVY VQQVTALAKG IDSGIYRITE VFQGELSLFK
FPPGVKKALL AYASFGS
//
