ID W5MTE0_LEPOC Unreviewed; 641 AA.
AC W5MTE0;
DT 16-APR-2014, integrated into UniProtKB/TrEMBL.
DT 16-APR-2014, sequence version 1.
DT 27-MAR-2024, entry version 47.
DE RecName: Full=Collagen alpha-1(XIII) chain {ECO:0008006|Google:ProtNLM};
OS Lepisosteus oculatus (Spotted gar).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae;
OC Lepisosteus.
OX NCBI_TaxID=7918 {ECO:0000313|Ensembl:ENSLOCP00000011649.1, ECO:0000313|Proteomes:UP000018468};
RN [1] {ECO:0000313|Proteomes:UP000018468}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Di Palma F., Alfoldi J., Johnson J., Berlin A., Gnerre S., Jaffe D.,
RA MacCallum I., Young S., Walker B.J., Lander E.S., Lindblad-Toh K.;
RT "The Draft Genome of Lepisosteus oculatus.";
RL Submitted (DEC-2011) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Ensembl:ENSLOCP00000011649.1}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (NOV-2023) to UniProtKB.
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DR EMBL; AHAT01003972; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AHAT01003973; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR AlphaFoldDB; W5MTE0; -.
DR STRING; 7918.ENSLOCP00000011649; -.
DR Ensembl; ENSLOCT00000011666.1; ENSLOCP00000011649.1; ENSLOCG00000009521.1.
DR eggNOG; KOG3544; Eukaryota.
DR GeneTree; ENSGT00940000154865; -.
DR HOGENOM; CLU_020867_0_0_1; -.
DR InParanoid; W5MTE0; -.
DR OMA; WTSRCSR; -.
DR Proteomes; UP000018468; Linkage group LG5.
DR Bgee; ENSLOCG00000009521; Expressed in larva and 9 other cell types or tissues.
DR GO; GO:0062023; C:collagen-containing extracellular matrix; IBA:GO_Central.
DR GO; GO:0005615; C:extracellular space; IBA:GO_Central.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0030020; F:extracellular matrix structural constituent conferring tensile strength; IBA:GO_Central.
DR GO; GO:0008201; F:heparin binding; IBA:GO_Central.
DR GO; GO:0030198; P:extracellular matrix organization; IBA:GO_Central.
DR InterPro; IPR008160; Collagen.
DR PANTHER; PTHR37456:SF4; COLLAGEN ALPHA-1(XIII) CHAIN ISOFORM X2; 1.
DR PANTHER; PTHR37456; SI:CH211-266K2.1; 1.
DR Pfam; PF01391; Collagen; 5.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000018468};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 35..57
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT REGION 147..641
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 223..243
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 251..276
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 322..338
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 501..518
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 598..612
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 641 AA; 63064 MW; 26C6BEA2DAC145A8 CRC64;
MESDQNWQVS PPSIAGRSCK EHPYKKRSLR NCKDLSAVAV CSALSLLSLG VCILAYLRTS
ELQARVLNLE KERDTHVSAW ISLDQMEPVT LGRLDQILEE KLAAHLPRVR EAREVPHSCV
CPPGPPGPPG RAGFPGDKGA MGIPGRMGLM GEPGEKGAPG EPGMSIIGPR GPPGQPGSRG
FPGFPGPIGL DGKPGEKGLK GDMGSRGPKG SQGEPGPKGE KGACGDYSHR ARRQADPDIG
ASHGDKGEPG ILGPPGPPGP PGAPGPEGPS GMPGKPGEPG KPGKDPKNMP GMKGEPGIPG
LPGQKGDAGE PGPLGLEGPK GSKGDEGSKG EKGDPGTAAD GMKGESGPPG PQGPEGPKGD
KGDQGSKGEN GSEGPSGPRG PPGQKGEPGK SESFDYNGNF NEKLQGPPGP PGPPGSPGVK
GEVGLPGPPG LDGEKGPRGK PGDPGPVGPA GPEGPKGENG LLGFPGPKGE KGETGPAGSP
GQKGESGQKG EKGDMVSGPP GPPGVQGPVG PAGPPGLSGP KGEPGIDGTK GVKGDVGQKG
DKGDRGPLGL PGLLGPAGVP GPAGPKGERG DKGDAGAPGP IGPPGIPGLQ GPQGLKGNRG
ERGKKGNRGA KGDKGDQGAP GLDAPCPLGD DGLPVPGCWN K
//
