ID   W6KN24_9TRYP            Unreviewed;       480 AA.
AC   W6KN24;
DT   16-APR-2014, integrated into UniProtKB/TrEMBL.
DT   16-APR-2014, sequence version 1.
DT   27-MAR-2024, entry version 34.
DE   RecName: Full=RNA polymerase II-associated protein 3 {ECO:0000256|ARBA:ARBA00040133};
GN   ORFNames=GSEM1_T00002066001 {ECO:0000313|EMBL:CCW63605.1};
OS   Phytomonas sp. EM1.
OC   Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina;
OC   Trypanosomatida; Trypanosomatidae; Phytomonas.
OX   NCBI_TaxID=479712 {ECO:0000313|EMBL:CCW63605.1, ECO:0000313|Proteomes:UP000027080};
RN   [1] {ECO:0000313|EMBL:CCW63605.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=EM1 {ECO:0000313|EMBL:CCW63605.1};
RA   Genoscope - CEA;
RL   Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:CCW63605.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EM1 {ECO:0000313|EMBL:CCW63605.1};
RX   PubMed=24516393; DOI=10.1371/journal.pgen.1004007;
RA   Porcel B.M., Denoeud F., Opperdoes F., Noel B., Madoui M.A.,
RA   Hammarton T.C., Field M.C., Da Silva C., Couloux A., Poulain J.,
RA   Katinka M., Jabbari K., Aury J.M., Campbell D.A., Cintron R., Dickens N.J.,
RA   Docampo R., Sturm N.R., Koumandou V.L., Fabre S., Flegontov P., Lukes J.,
RA   Michaeli S., Mottram J.C., Szoor B., Zilberstein D., Bringaud F.,
RA   Wincker P., Dollet M.;
RT   "The Streamlined Genome of Phytomonas spp. Relative to Human Pathogenic
RT   Kinetoplastids Reveals a Parasite Tailored for Plants.";
RL   PLoS Genet. 10:e1004007-e1004007(2014).
CC   -!- SIMILARITY: Belongs to the RPAP3 family.
CC       {ECO:0000256|ARBA:ARBA00038275}.
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DR   EMBL; HF955076; CCW63605.1; -; Genomic_DNA.
DR   AlphaFoldDB; W6KN24; -.
DR   EnsemblProtists; CCW63605; CCW63605; GSEM1_T00002066001.
DR   OrthoDB; 1430075at2759; -.
DR   Proteomes; UP000027080; Unassembled WGS sequence.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 1.
DR   InterPro; IPR025986; RPAP3-like_C.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   InterPro; IPR019734; TPR_repeat.
DR   PANTHER; PTHR46423; RNA POLYMERASE II-ASSOCIATED PROTEIN 3; 1.
DR   PANTHER; PTHR46423:SF1; RNA POLYMERASE II-ASSOCIATED PROTEIN 3; 1.
DR   Pfam; PF13877; RPAP3_C; 1.
DR   SMART; SM00028; TPR; 3.
DR   SUPFAM; SSF48452; TPR-like; 1.
DR   PROSITE; PS50005; TPR; 1.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000027080};
KW   TPR repeat {ECO:0000256|ARBA:ARBA00022803, ECO:0000256|PROSITE-
KW   ProRule:PRU00339}.
FT   REPEAT          82..115
FT                   /note="TPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT   DOMAIN          365..450
FT                   /note="RNA-polymerase II-associated protein 3-like C-
FT                   terminal"
FT                   /evidence="ECO:0000259|Pfam:PF13877"
FT   REGION          202..247
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        208..223
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   480 AA;  54945 MW;  28C6B3A0FCC2BC25 CRC64;
     MNVTAVTAIR QQSDDLRDEL KDLDQWVNEM EKLEESKKCR KATTFSVEAE VPIRGTVPSI
     KQALADLARK GGKQLSPEQD PIHIQKEKGN EYFRIGKNKD AIDSYTVGIE LDPKGDIAHI
     LYANRAMCWI REKQWEKAEK DATVCIQMNR SYVKGYFRRA VARKNLHDFK GARSDLESVL
     ALVPNDTSAL EELNVVTKML QSEREKTAAP TATRKRIAIE EVDDSDAEPS EFIEPSEEEK
     QRKEQVKENM EELERIIRND ERNRLEATLK LEKEMETKRR QSTRVEVLEA EDEINYAHKS
     PGAVKNSLNN VSDVTTHVDE KLGLPPPQAK DNEAKINISS AAKQDKQPRT VHPRPRLTKE
     SLKSPKSFIE FEKIFSEIES DEELRDHFVS SINPALFSSL FGSNMTPEIF IGLLRSIRRF
     PGSTVLQYLK GLCRVNRIED IALFLNTEEK KLVDDVLCLL KNFGVPEKEV ILIQRKLKPF
//