ID W7U1Y4_9STRA Unreviewed; 372 AA.
AC W7U1Y4;
DT 16-APR-2014, integrated into UniProtKB/TrEMBL.
DT 16-APR-2014, sequence version 1.
DT 27-MAR-2024, entry version 28.
DE SubName: Full=U6 snrna-associated sm-like protein lsm1 {ECO:0000313|EMBL:EWM29828.1};
GN Name=LSm1 {ECO:0000313|EMBL:EWM29828.1};
GN ORFNames=Naga_100017g1 {ECO:0000313|EMBL:EWM29828.1};
OS Nannochloropsis gaditana.
OC Eukaryota; Sar; Stramenopiles; Ochrophyta; Eustigmatophyceae;
OC Eustigmatales; Monodopsidaceae; Nannochloropsis.
OX NCBI_TaxID=72520 {ECO:0000313|EMBL:EWM29828.1, ECO:0000313|Proteomes:UP000019335};
RN [1] {ECO:0000313|EMBL:EWM29828.1, ECO:0000313|Proteomes:UP000019335}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=B-31 {ECO:0000313|EMBL:EWM29828.1,
RC ECO:0000313|Proteomes:UP000019335};
RX PubMed=23966634; DOI=10.1093/mp/sst120;
RA Corteggiani Carpinelli E., Telatin A., Vitulo N., Forcato C., D'Angelo M.,
RA Schiavon R., Vezzi A., Giacometti G.M., Morosinotto T., Valle G.;
RT "Chromosome Scale Genome Assembly and Transcriptome Profiling of
RT Nannochloropsis gaditana in Nitrogen Depletion.";
RL Mol. Plant 7:323-335(2014).
CC -!- SUBCELLULAR LOCATION: Cytoplasm, P-body
CC {ECO:0000256|ARBA:ARBA00004201}.
CC -!- SIMILARITY: Belongs to the snRNP Sm proteins family.
CC {ECO:0000256|ARBA:ARBA00006850}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EWM29828.1}.
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DR EMBL; AZIL01000116; EWM29828.1; -; Genomic_DNA.
DR AlphaFoldDB; W7U1Y4; -.
DR EnsemblProtists; EWM29828; EWM29828; Naga_100017g1.
DR OrthoDB; 1113423at2759; -.
DR Proteomes; UP000019335; Chromosome 2.
DR GO; GO:0000932; C:P-body; IEA:UniProtKB-SubCell.
DR GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0000956; P:nuclear-transcribed mRNA catabolic process; IEA:InterPro.
DR CDD; cd01728; LSm1; 1.
DR Gene3D; 2.30.30.100; -; 1.
DR InterPro; IPR034104; Lsm1.
DR InterPro; IPR010920; LSM_dom_sf.
DR InterPro; IPR044642; PTHR15588.
DR InterPro; IPR047575; Sm.
DR InterPro; IPR001163; Sm_dom_euk/arc.
DR PANTHER; PTHR15588; LSM1; 1.
DR PANTHER; PTHR15588:SF8; U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1; 1.
DR Pfam; PF01423; LSM; 1.
DR SMART; SM00651; Sm; 1.
DR SUPFAM; SSF50182; Sm-like ribonucleoproteins; 1.
DR PROSITE; PS52002; SM; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000019335}.
FT DOMAIN 264..339
FT /note="Sm"
FT /evidence="ECO:0000259|PROSITE:PS52002"
FT REGION 9..227
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 9..23
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 74..90
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 93..118
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 143..157
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 174..196
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 206..227
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 372 AA; 40044 MW; 09E67B30B3839A25 CRC64;
MPCFLVFRAS SYSTGSQSNK NPMEPGPGKP RPLQGVWAQP RSRPSPPSSE PPSASANSGL
TGTKIELSDL FGARPSVPQS TGTGQAPPFP VQPQYLQHHP PPQAQAPPHY PQTTPPIQYP
PHQVQAHASA PHQLAFPASH PFHARPHPMP PGAMTMHGRP PPGLTGNGFA SPSGSPPSAP
PFHPNAPPPF PPQQAQPLHP SAHMHPPQSL ASTSTAPGPR PPQLQQEQLQ QLRMMMHAGG
APQPGPHYML PPRPFVAVLP DYLPGAASLV EQLDRRVLVV LRDGRNLVGV MRSFDQFSNM
VLEDTYERHV VDGKYGDLPL GLYLVRGDAV VLLGEVEAER EGKSLEKVTT EEILELLQGS
GEAGAKLEWD FE
//
