ID W9V9W4_9GAMM Unreviewed; 494 AA.
AC W9V9W4;
DT 14-MAY-2014, integrated into UniProtKB/TrEMBL.
DT 14-MAY-2014, sequence version 1.
DT 24-JAN-2024, entry version 35.
DE RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|ARBA:ARBA00019942, ECO:0000256|PIRNR:PIRNR000774};
GN ORFNames=D779_0317 {ECO:0000313|EMBL:EXJ16383.1};
OS Imhoffiella purpurea.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Chromatiales; Chromatiaceae;
OC Imhoffiella.
OX NCBI_TaxID=1249627 {ECO:0000313|EMBL:EXJ16383.1, ECO:0000313|Proteomes:UP000019460};
RN [1] {ECO:0000313|EMBL:EXJ16383.1, ECO:0000313|Proteomes:UP000019460}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AK35 {ECO:0000313|EMBL:EXJ16383.1,
RC ECO:0000313|Proteomes:UP000019460};
RA Nupur N., Khatri I., Subramanian S., Pinnaka A.;
RT "Genome assembly of Thiorhodococcus sp. AK35.";
RL Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Sigma factors are initiation factors that promote the
CC attachment of RNA polymerase to specific initiation sites and are then
CC released. {ECO:0000256|PIRNR:PIRNR000774}.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798, ECO:0000256|PIRNR:PIRNR000774}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EXJ16383.1}.
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DR EMBL; AONC01000012; EXJ16383.1; -; Genomic_DNA.
DR RefSeq; WP_043750018.1; NZ_AONC01000012.1.
DR AlphaFoldDB; W9V9W4; -.
DR STRING; 1249627.D779_0317; -.
DR PATRIC; fig|1249627.3.peg.914; -.
DR eggNOG; COG1508; Bacteria.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000019460; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00717; SIGMA54_1; 1.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PIRNR:PIRNR000774};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW ECO:0000256|PIRNR:PIRNR000774};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW ECO:0000256|PIRNR:PIRNR000774};
KW Reference proteome {ECO:0000313|Proteomes:UP000019460};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082,
KW ECO:0000256|PIRNR:PIRNR000774};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|PIRNR:PIRNR000774};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW ECO:0000256|PIRNR:PIRNR000774};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|PIRNR:PIRNR000774}.
FT DOMAIN 130..320
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 336..492
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 48..81
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 494 AA; 55676 MW; 0461455F0684ECFB CRC64;
MKQSIQLRLS QHLTMTPQLQ QAIKLLQLST LELQKEIQEA LETNLMLEEG DESERSPAAE
SQDARIDHSQ DAEPQRGEQD LAIDREIRAE SNEMPEDLPV DTQWTDVYDS YLPPTVHGTD
DGSDFDPFAQ QSRPQTLQDH LAWQLNLSRL NDRDDAIAQA VIDSIDRDGY LRADVEDLVA
AIDDPGVSLE EIETLVHRVQ SLDPPGIGAR NLQECLIIQL RQLPQRTGAR DLAIRVCAEG
FDHLPRGDIA ALARQLKEPE ERIAEALALI RRLNPRPGNL IEEAPPEYVV PDIFVRKREG
RWHVELNPES TPKLRVNADY ASLIRRADQS ADGATLKSHL QEARWFIKSL TSRNDTVLRV
GSKIVEMQQD FFEHGDEGMR PMVLRDIAEA LELHESTVSR VTTQKFMHTP RGTFEFKYFF
SSHVSTASGG ECSSTAIRAL IRKLISGESA RKPLSDSKIA QELADQGIKV ARRTVAKYRE
AMGIPPSNER KRLA
//
