ID   X6MXS5_RETFI            Unreviewed;       309 AA.
AC   X6MXS5;
DT   11-JUN-2014, integrated into UniProtKB/TrEMBL.
DT   11-JUN-2014, sequence version 1.
DT   28-JUN-2023, entry version 18.
DE   RecName: Full=Upf1 domain-containing protein {ECO:0000259|Pfam:PF09416};
DE   Flags: Fragment;
GN   ORFNames=RFI_18859 {ECO:0000313|EMBL:ETO18406.1};
OS   Reticulomyxa filosa.
OC   Eukaryota; Sar; Rhizaria; Retaria; Foraminifera; Monothalamids;
OC   Reticulomyxidae; Reticulomyxa.
OX   NCBI_TaxID=46433 {ECO:0000313|EMBL:ETO18406.1, ECO:0000313|Proteomes:UP000023152};
RN   [1] {ECO:0000313|EMBL:ETO18406.1, ECO:0000313|Proteomes:UP000023152}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=24332546;
RA   Glockner G., Hulsmann N., Schleicher M., Noegel A.A., Eichinger L.,
RA   Gallinger C., Pawlowski J., Sierra R., Euteneuer U., Pillet L.,
RA   Moustafa A., Platzer M., Groth M., Szafranski K., Schliwa M.;
RT   "The Genome of the Foraminiferan Reticulomyxa filosa.";
RL   Curr. Biol. 0:0-0(2013).
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:ETO18406.1}.
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DR   EMBL; ASPP01014972; ETO18406.1; -; Genomic_DNA.
DR   AlphaFoldDB; X6MXS5; -.
DR   EnsemblProtists; ETO18406; ETO18406; RFI_18859.
DR   Proteomes; UP000023152; Unassembled WGS sequence.
DR   GO; GO:0005737; C:cytoplasm; IEA:InterPro.
DR   GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:InterPro.
DR   InterPro; IPR018999; UPF1_CH/ZBD.
DR   Pfam; PF09416; UPF1_Zn_bind; 1.
PE   4: Predicted;
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000023152};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM        285..307
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          4..54
FT                   /note="Upf1"
FT                   /evidence="ECO:0000259|Pfam:PF09416"
FT   NON_TER         1
FT                   /evidence="ECO:0000313|EMBL:ETO18406.1"
FT   NON_TER         309
FT                   /evidence="ECO:0000313|EMBL:ETO18406.1"
SQ   SEQUENCE   309 AA;  36638 MW;  7B3A9F7E42613CA4 CRC64;
     DLLDKGWDPS TWQALIYEKQ LLPCLADVPS PKQLTKARLV NDRDIKDLED LWMSDPSKTW
     DDLILWNQRQ LVQSVSSSYA STQHYSDAYL PLIELEEEAD RNECIFQVLF YLKKKKKRKR
     GTILCYSIYI LYIYRLEGMP VEWRLSQVQK TQMARFVLPT TRMNIDWDVR PGMQNWKKAG
     PKTGVVHDVK HDCEVTLIFK EGTVDFKEGL NEPEPEPFPT DITTGFDIEV VWIGVPYKRM
     REAVQKLVTD EFAMTEYLLH TLLGNEVKVE KSEYSSNEIK YSFDYIFYIF YLYSVYMYVY
     VYVYMYILI
//