KEGG   Uncinocarpus reesii: UREG_00407
Entry
UREG_00407        CDS       T01132                                 
Name
(RefSeq) similar to RNA helicase
  KO
K11594  ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
Organism
ure  Uncinocarpus reesii
Brite
KEGG Orthology (KO) [BR:ure00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ure03019]
    UREG_00407
   03041 Spliceosome [BR:ure03041]
    UREG_00407
   03036 Chromosome and associated proteins [BR:ure03036]
    UREG_00407
Enzymes [BR:ure01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     UREG_00407
Messenger RNA biogenesis [BR:ure03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     UREG_00407
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     UREG_00407
Spliceosome [BR:ure03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    UREG_00407
Chromosome and associated proteins [BR:ure03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    UREG_00407
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 8444490
NCBI-ProteinID: XP_002540894
UniProt: C4JDY3
AA seq 608 aa
MASLDIDSAATAIKEVSEAFKLNGNMNAEAAALAREKGWGAPQSYNYDAYNTKPQAGVGP
NGDYDVSVWASNGAKYEWKDEYGDVGPRNEELEQMLFRDEYINRAGELFRTLREIKVTAE
TTHQPEPIKSFDDAGLHPVVLENVKHCGYEVPTPVQAYAIPAVLTGYDLIAVAQTGSGKT
AAFLIPVISKLMGKAKKLAAPRPDLTNGFNESVDAVRAEPLVLIVAPTRELATQIFDEAR
RLCYRSMLRPCVIYGGAPTREQRIDLHKGCDILIGTPGRILDFMAKPHLLSLNRVKYTII
DEADEMLQSDWEREFTQIMSGGDVNEDADHRYMMFSATFNKACRQLARRFLSTDHVRIRV
GRAGSSHLNVTQQVIFTEDDKKRKALYDLILSMPPSRTLIFVNSKPQADLIDDFLFNNGL
PSTSIHSDRTQREREDAIRAFRTGVCPIMVTTGVSARGLDIRHVMHVINFDLPSVDHGGI
DEYIHRIGMPSFQYLKELWRTARIGNQGLATSFYNDDRNSAIAPDLVKVLLECKQAVPDF
LEPYAPGNGELEWNDDTDGEGDDEEVPGDAAWGADAGGTAGWGENAAPAAEPEPEAAGWN
AGDSGAAW
NT seq 1827 nt   +upstreamnt  +downstreamnt
atggcgagccttgacattgactccgccgccacggcgatcaaagaagtatctgaggctttt
aagctcaacggaaatatgaatgctgaagctgccgctttggctcgcgaaaagggctggggt
gcacctcagtcttataattatgatgcttacaatactaaaccccaagctggcgtgggcccg
aatggtgattatgatgtttctgtttgggcctccaatggtgccaaatacgaatggaaggat
gagtatggtgacgttggcccccgaaatgaagagcttgagcaaatgctcttccgcgacgaa
tacattaatcgtgctggagaattgtttcgaaccctgcgcgaaatcaaagtgactgctgag
actactcaccaaccagaacccatcaagagtttcgatgacgccggccttcacccagtcgtg
cttgaaaacgtgaagcattgcggctacgaagttcccactcctgtccaagcttatgctatc
ccagctgttttgactggctatgatttaattgccgttgcccaaactggctccggtaaaaca
gctgcattcttgattccggttatttccaagttgatgggaaaggcaaaaaagctcgcagct
ccgcgtccggacctcactaatggttttaatgagagtgttgatgccgttcgtgccgagcca
ttagtactcattgttgctccgacacgcgagttggccactcagatttttgacgaggctcgt
cgtctctgctaccgctctatgcttcgtccttgcgttatttacggcggtgcacctactaga
gagcaacgtatcgatttgcataaaggatgcgatatcctcattggaactcccggaagaatc
ttggattttatggccaaaccccatttgttgtcgcttaacagagtcaagtacaccatcatt
gacgaggccgatgagatgttgcagtctgactgggaacgtgaatttacccaaatcatgtcc
ggtggagatgttaacgaggacgccgatcatcgttatatgatgttttctgctaccttcaac
aaggcatgccgtcagctcgctcgtcgttttctttctaccgaccatgtccgtattcgcgtt
ggtcgcgccggaagttctcacttgaatgtgacgcagcaagttattttcaccgaggacgac
aagaaaagaaaggctctttacgatttgattctctctatgccgccgtcccggactttgatt
tttgtcaacagcaagccgcaggctgatttaatcgatgatttccttttcaacaacggtttg
ccaagtacttctatccattctgatcgcactcagcgcgaacgtgaggacgcaatccgtgcc
ttccgtaccggtgtctgcccaatcatggttactacgggtgtctccgcacgcggtctcgat
atcaggcatgtgatgcacgtcatcaatttcgatttaccaagcgtggaccatggtggtatc
gatgaatacatccatcgcattggtatgcccagttttcagtatctaaaggaattatggcga
accgcacgtattggaaaccaaggtctcgcaacttctttctacaacgatgatcggaactcc
gctatcgcgcctgatctggtcaaagttctccttgaatgcaagcaggccgttccggatttc
cttgagccgtacgctccgggcaacggagaactcgaatggaacgacgataccgatggagaa
ggagacgatgaggaagttcctggcgatgcagcttggggtgctgatgctggtggtaccgcg
ggatggggtgaaaacgctgcaccagctgccgaacctgaacctgaggccgctggctggaat
gcgggtgactccggtgccgcctggtaa

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Ontology (5)   
   KEGG BRITE (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (26)   

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