KEGG   Vibrio alginolyticus: N646_1996
Entry
N646_1996         CDS       T02840                                 
Name
(GenBank) DNA-directed RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
vag  Vibrio alginolyticus
Pathway
vag03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vag00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    N646_1996
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vag03021]
    N646_1996
   03400 DNA repair and recombination proteins [BR:vag03400]
    N646_1996
Enzymes [BR:vag01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     N646_1996
Transcription machinery [BR:vag03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     N646_1996
DNA repair and recombination proteins [BR:vag03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      N646_1996
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 Cas_Cas2CT1978
Other DBs
NCBI-ProteinID: AGV17818
UniProt: A0A2I3CBY2
Position
1:complement(2166185..2170213)
AA seq 1342 aa
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKSTEEILDIFFEKVNFEVKDQTLLME
LVPDRLRGETASFDIEANGKVYVEQGRRVTARHIRQLEKDGVDHIEVPVEYIVGKVASKD
YINEATGEIIVNANQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSETLRIDSTVDRI
SALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGREDAQEQGTL
DETDIIEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVDGVVT
DEVDYLSAIEEGQFVIAQANAKLNEDGTFADELITARQKGESGLHPREHAQYMDVATNQV
VSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAVDSGVTAVAKR
GGVIQSVDASRIVVKVNEEELVPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVSRG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELTCVA
RDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFQILEGGLLNRVKAVLIEGGYSEAKLDTTDRKKWLELTLEDDALQTQLEQLAEQWDE
LKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMVKEQQELAK
FREFLQKVYDLGDTRQKVDIASLSDDEVRTLIKNLRGGLPIATPVFDGAPEESIKALLEL
ADLPTSGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHSMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcttataccgagaaaaagcgcatccgtaaggactttggtactcgtccacaa
gttttggacattccatacctgctatcgatccagctcgattcgttcgacaaatttatcgaa
caggatcctgaaggtcaatacggtcttgaagccgctttccgttctgtattcccgattcag
agctacaacggcaattctgagctgcaatacgttagctaccgtcttggtgagccagttttt
gacgttaaagaatgtcaaatccgcggtgtaacttactcaaagccactacgtgtaaaacta
cgcctagttatctttgataaagacgcgccagcaggtactgtaaaagacattaaagaacaa
gaagtctacatgggtgaaattccactcatgacagacaatggtaccttcgtaatcaacggt
accgagagggttatcgtatcccagctgcaccgaagcccaggcgtgttcttcgacagcgat
aagggtaagacccactcttcaggtaaagttttatacaacgcacgtgttattccttaccgt
ggttcatggcttgatttcgagtttgatcctaaggataacttatacgttcgtatcgaccgc
cgtcgtaagctaccagcatcgatcatccttcgagcactaggtaagtcgacagaagaaatc
ctagatatcttcttcgagaaagtgaacttcgaagtgaaagaccaaactctattgatggag
ttggttccggatcgtctacgtggtgaaactgcgtcattcgacatcgaagcaaatggtaaa
gtttacgttgagcaaggtcgtcgcgtaacagctcgtcatatccgccaactagaaaaagat
ggtgttgatcacatcgaagtaccagttgagtacatcgtaggtaaagttgcatcaaaagat
tatatcaatgaagcaacaggcgagatcattgttaacgctaaccaggaaatcagcctggaa
gcactagcgaacctatctcaggctggccacaaagcgctagaagttctattcacgaacgat
ctagaccatggtccattcatgtcagaaacactacgtatcgacagcacggttgatcgtatt
tctgcattggtagaaatctaccgcatgatgcgccctggtgagccgccaacaaaagaagct
gcagaagctctattcgaaagcctattcttctctgaagagcgttacgatctatcgactgtt
ggtcgtatgaagttcaacagctctatcggccgtgaagatgctcaagagcaaggcacactt
gatgaaactgatatcatcgaagtgatgaagaagctgatcgcgatccgtaacggtaagggc
gaagtggacgatatcgaccacctaggcaaccgtcgtatccgttctgtaggcgaaatggct
gagaaccagttccgtgtaggtctagtacgtgttgagcgtgcagttaaagagcgtctaagc
ctaggcgatcttgacgcaatcatgcctcaagacttgatcaacgcgaagccaatttctgcg
gcagttaaagaattctttggctcttcacagctttcacagttcatggaccaaaacaacccg
ctatcagaagtaacgcacaagcgtcgtatttctgcattgggtcctggcggtctaactcgt
gaacgtgctggcttcgaagtacgtgacgtacacgtaactcactacggtcgtctatgtcct
atcgaaacgcctgaaggtccaaacatcggtctgatcaactctctatctgcgtttgcgcgt
tgtaacgagtacggtttcctagagacaccataccgtcgcgttgtagatggcgtagtaaca
gacgaagtagattacctatctgcaatcgaagaaggccaattcgttatcgcacaggcgaac
gctaagctaaacgaagatggtacttttgcagatgagttgatcacagctcgtcagaaaggt
gaatctggtctacaccctcgtgagcacgctcagtacatggacgttgcgacaaaccaggtt
gtatctatcgctgcatcgcttatcccgttcctagaacacgatgatgcgaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcagttccaacactgaaagctgacaaaccgcttgtt
ggtactggtattgaacgtaacgtagccgttgactcaggtgtaactgcagttgctaaacgt
ggtggtgtaatccagtcagtagatgcttctcgtatcgttgttaaagttaacgaagaagag
ctagtaccaggtgaagctggtatcgacatctacaacctgactaaatacacacgttctaac
cagaacacatgtattaaccagcgcccatgtgtgatgccaggtgagcctgtatcacgcggt
gatgttcttgctgatggtccttcaacagaccttggtgaactagcgcttggtcaaaacatg
cgtatcgcgttcatgccttggaacggttacaacttcgaagactcgatcttagtatctgag
cgcgtagttcaagaagaccgtttcacgactatccacatccaagaactgacttgtgtggcg
cgtgatactaagcttggttctgaagagatcacagcggatattccaaacgtaggtgagtct
gctctgtctaaactagacgagtcaggtatcgtttacatcggtgctgaagttaagggtggc
gacatcctagttggtaaagttacacctaaaggtgaaactcagctaacgcctgaagagaag
ctactacgtgcaatcttcggtgaaaaagcatctgacgttaaagatacttcactacgtgta
cctaactctgtatcaggtacgatcatcgacgttcaagtctttactcgcgatggcgtagag
aaagacaagcgtgcgcttgaaatcgaacagatgcagcttaaagaagcgaagaaagaccta
actgaagaattccagattcttgagggcggccttctaaaccgtgttaaagctgtattgatt
gaaggcggttactctgaagcgaaactagacacaactgatcgtaagaagtggctagaacta
acgctagaagatgacgcactacaaactcagcttgagcaacttgctgagcagtgggatgag
ctaaaagccgacttcgataagaagttcgaaactaagcgtcgtaagatcactcaaggtgat
gatttagcacctggtgtactgaagatcgttaaggtttacctagcggttaaacgtcgcatt
cagcctggtgataagatggcgggtcgtcacggtaacaagggtgtaatctctaagatcaac
cctgttgaagacatgccatacgatgagaaaggtcagcctgtagacatcgtacttaaccca
ctgggtgtaccttcgcgtatgaacatcggtcagatcctagaagtacacttaggtctggca
gcgaaaggtatcggtgacaagatcaaccagatggttaaagagcagcaagaactagcgaaa
ttccgcgagttcctacaaaaagtttacgatctaggcgacactcgccagaaagtagacatt
gcttctctatctgatgatgaagtacgtactctgatcaagaacttgcgtggcggtctacca
atcgcgactcctgtatttgatggcgctccagaagagtcaatcaaagcacttcttgagcta
gcagatctaccaacatcaggtcagttaacactgtttgatggtcgcacaggtgatgcgttt
gagcgtcctgtaactgttggttacatgtacatgctgaaactgaaccaccttgttgatgac
aagatgcacgctcgttcaactggttcgtacagcctagtaactcagcagccactaggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcactagaagcatac
ggtgctgcttacacgctacaagaaatgctaacggttaagtcggatgacgttaacggccgt
actaagatgtacaagaacatcgtagacggtaaccacagcatggaacctggcatgccagaa
tcgttcaacgtactgttgaaagagatccgctcgctaggtatcaacatcgagctagaagac
gaagagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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