KEGG   Verticillium alfalfae: VDBG_04747
Entry
VDBG_04747        CDS       T02227                                 
Name
(RefSeq) ATP-dependent RNA helicase eIF4A
  KO
K03257  translation initiation factor 4A
Organism
val  Verticillium alfalfae
Brite
KEGG Orthology (KO) [BR:val00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:val03019]
    VDBG_04747
   03012 Translation factors [BR:val03012]
    VDBG_04747
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:val04147]
    VDBG_04747
Messenger RNA biogenesis [BR:val03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     VDBG_04747
   mRNA cycle factors
    Stress granule specific factors
     VDBG_04747
Translation factors [BR:val03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    VDBG_04747
Exosome [BR:val04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   VDBG_04747
  Exosomal proteins of bladder cancer cells
   VDBG_04747
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 AAA_30 IL17R_D_N CMS1 Flavi_DEAD fragilysinNterm
Other DBs
NCBI-GeneID: 9530360
NCBI-ProteinID: XP_003005141
UniProt: C9SI65
AA seq 397 aa
MADSQGLEEINEATIESNWTEVCESFDDMELKSELLRGVYAYGFERPSAIQARAIMPVVK
GNDVIAQAQSGTGKTATFSISVLQKIDPAVKQCQALILAPTRELAQQIQKVVIAIGDFMN
IECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLS
RGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQF
YIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQG
QRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRK
GVAINFVTAEDVRMMREIEQFYSTQIEEMPMNVADLI
NT seq 1194 nt   +upstreamnt  +downstreamnt
atggctgactctcagggactggaggagatcaacgaggcgaccatcgagtccaactggacc
gaggtttgcgagtcgttcgacgacatggagctgaagtctgagcttctccgtggtgtctac
gcctacggtttcgagcgtccctccgccatccaggcccgtgccatcatgcccgttgtcaag
ggtaacgatgtcattgcccaggcccagtccggtactggcaagaccgccaccttctccatc
tctgtcctgcagaagatcgaccccgccgtcaagcagtgccaggcccttatccttgctccc
acccgtgagctggcccagcagatccagaaggtcgtcatcgccatcggtgacttcatgaac
attgagtgccacgcctgcatcggcggcacctctgtccgcgacgacatgaaggccctccag
gacggtcctcaggtcgtcgtcggtacccccggccgtgtccacgacatgatccagcgtcgt
ttcctcaagaccgacagcatgaagatgttcgttctcgacgaggccgacgagatgctttcg
cgcggtttcaccgagcaaatctacgacatcttccagctccttccccagagcacccaggtc
gtccttctctccgccaccatgccccaggacgtcctcgaggtcaccaccaagttcatgcgc
gaccccatccgtattctcgtcaagaaggacgagcttacccttgagggtatcaagcagttc
tacattgccgtcgagaaggaggagtggaagctcgacaccctctccgatctgtacgagact
gtcaccatcacccaggccgtcatcttctgcaacacccgtcgcaaggtcgactggctcacc
gacaagctcactgcccgtgacttcaccgtctccgccatgcacggtgacatggaccagggt
cagcgtgacctgattatgaaggagttccgttccggttcttcccgtgtcctgatcgccacc
gatcttctggctcgtggcatcgacgtccagcaggtctcgctggtcatcaactacgacctt
cccgccaaccgcgagaactacatccaccgtatcggtcgtggtggccgtttcggccgtaag
ggcgttgcgatcaactttgttaccgccgaggatgttcgcatgatgcgtgagattgagcag
ttctacagcacccagattgaggagatgcccatgaacgtcgccgacctcatctaa

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Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (116)   
   KEGG ORTHOLOGY (1)   
   RefGene (112)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (134)   

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