KEGG   Variovorax sp. PMC12: C4F17_15980
Entry
C4F17_15980       CDS       T05380                                 
Name
(GenBank) Hcp1 family type VI secretion system effector
  KO
K11903  type VI secretion system secreted protein Hcp
Organism
vam  Variovorax sp. PMC12
Pathway
vam03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vam00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    C4F17_15980
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vam02044]
    C4F17_15980
Secretion system [BR:vam02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   C4F17_15980
SSDB
Motif
Pfam: T6SS_HCP
Other DBs
NCBI-ProteinID: AVQ82327
UniProt: A0A2P1VAZ9
Position
1:3437476..3437955
AA seq 159 aa
MSSDFHIKLDGVKGESSHKDHKDEIEISSWSWNVSNSSGAGSGGGSGKGKATPGEFHFTH
TYDKASPVLAKNCVSGKHFKDMVLTCRKAGEGQQEYLKVTMKEVFISGVSPGGAQGGDVH
EQVLCSFKDIEFAYKAQDDKGAAGGEVKFGWNVPTTETR
NT seq 480 nt   +upstreamnt  +downstreamnt
atgtcttctgactttcacatcaagctcgacggcgtcaagggcgagtcttcccacaaggat
cacaaggacgagatcgagatctcgtcgtggtcctggaacgtgagcaactcgtcgggcgcg
ggctccggcggcggttccggcaagggcaaggccacgcccggcgaattccacttcacgcac
acctacgacaaggcctctccggtgctggccaagaactgcgtgagcggcaagcacttcaag
gacatggtcctgacctgccgcaaggccggcgaaggccagcaggagtacctgaaggtcacc
atgaaggaagtcttcatctccggcgtgagccccggcggcgcgcagggcggcgacgtgcac
gagcaggttctttgctcgttcaaggacatcgagttcgcctacaaggcgcaggacgacaag
ggtgcggccggcggcgaagtgaagttcggctggaacgtgccgaccaccgaaacccgctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (9)   

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