KEGG   Verrucomicrobia bacterium IMCC26134: IMCC26134_05315
Entry
IMCC26134_05315   CDS       T03830                                 
Name
(GenBank) hypothetical protein
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
vba  Verrucomicrobia bacterium IMCC26134
Pathway
vba03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vba00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    IMCC26134_05315
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vba03400]
    IMCC26134_05315
Enzymes [BR:vba01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     IMCC26134_05315
DNA repair and recombination proteins [BR:vba03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     IMCC26134_05315
SSDB
Motif
Pfam: AAA_19 AAA_30 Viral_helicase1 UvrD_C_2 AAA_11 UvrD-helicase Helicase_RecD AAA_22 PhoH DEAD SH3_13 SLFN-g3_helicase nSTAND3 AAA_16 AAA_24 Mg_chelatase ResIII UvrD_C HTH_15 Herpes_Helicase AAA_28 TrwB_AAD_bind DO-GTPase1
Other DBs
NCBI-ProteinID: AKC82336
UniProt: A0A0E3UHY6
Position
complement(1438496..1440250)
AA seq 584 aa
MSLPSSPDLLPPEIDLLVRRWHLPAERVDDVKALLEEQARGGTAGRLTDASPTAAAGWGS
AAQLAPAPGVADLPAPTPLVLQRHGGDTYLQSWRFFQAEHTIARHLLARAARPAPALTRP
SADLLASLGTDRINPLQARAIACALDHSLALITGGPGTGKTHTLARLLALLLAAQPAGTA
PVIRLAAPTGKAAERMKEAIEAAADHLPASLPPDTQSRLKATATTACTLHKLLGFHPGTG
RCRHTAGAPLRCDVLIIDECSMVDTLQWQALLTALPATARLILLGDPNQLESVSAGDVLG
ALVRQARAFPACPLAGTWVELTESIRFRAHPAIGALAEAVVNVQADAALHLLATHRPNNA
ATTLPADGLSWLGDHANRFAWASLPPSVQTALAAIADAPSPAEALAALGRVRLLAAHREN
TVGVAGLNAAIERHLRARRDTNHAPGKEPKINKPIIINRNDPETGLTNGSVGIIMSDTDG
VNSAFFPGDSAAAAPRRVSWGQLPDHSAAWAMTIHRSQGSEFEQVVVILPSDESPLATRE
LIYTGITRAKSCVHVWGAEATVRKALADRAGRCTLLESALSGAE
NT seq 1755 nt   +upstreamnt  +downstreamnt
atgagcctcccctcttcaccagacctcctcccgcccgagatcgacctgctcgtgcgccgc
tggcacctgcccgccgaacgcgttgacgacgtcaaagccctgctcgaagaacaggcccgg
ggcggcactgccggtcgcctgacggacgcctcgcccaccgctgccgcaggctggggttcc
gccgcgcaactcgcgcccgcccccggcgtcgccgatctccccgcgccgactccgctcgtg
cttcagcgtcacggtggggacacctacctccagtcgtggcgcttcttccaggccgagcac
accatcgcccgccacctgctcgcccgcgccgcccgccccgcccccgcgctcacccgcccc
tctgccgatctcctcgccagccttggaaccgatagaatcaatcccctccaggcccgggcc
atcgcctgcgcgctggaccattcgctcgccctcatcaccggtggccccggcacgggcaag
acccacaccctcgcccgccttctcgcccttctcctcgccgcccaacccgccggcacagcc
cccgtcatccgcctcgccgcccccaccggcaaagccgccgagcgcatgaaggaggccatc
gaggctgccgccgatcacctccccgccagcctgccccccgatacgcagagccggctaaag
gccaccgccaccaccgcctgcacgctccacaagctcctcggctttcaccccggcaccggt
cgctgccgccacacggccggagccccgctgcgctgcgacgtgctcatcatcgacgaatgc
tcgatggtggacacccttcaatggcaggcgctgctcaccgccctgcccgccaccgcccgc
ctcattctcctcggcgaccccaaccagctcgaaagcgtctccgccggagatgttctcggc
gccctcgtccgccaggcccgcgcctttcccgcctgccccctggccggcacctgggtcgag
ctgaccgaaagcatccgtttccgcgcccaccccgccatcggagcgctggccgaagccgtg
gtaaacgttcaggccgacgccgccctccacctgcttgccacgcacaggccgaacaacgcc
gccaccaccctgcctgccgacggtctgagctggctcggcgaccacgccaaccgcttcgcc
tgggccagcctgcccccctccgtgcagactgcgctcgccgccatcgccgacgccccttcg
cctgccgaagcgctggccgcgcttggccgggtgcgcctgctcgccgcccaccgtgaaaac
accgtcggcgtggccggcctcaacgccgccatcgagcgccacctccgcgcccgccgcgac
acgaaccacgcgcccggtaaggagccaaagatcaacaagcccatcatcatcaatcgcaac
gacccggagaccggcctgaccaacggctccgtcggtatcatcatgtccgatacggacggc
gtgaatagcgcctttttccccggtgactcggccgccgccgcgccccgccgcgtatcctgg
ggccagttacccgaccacagcgcggcgtgggccatgacgatccaccgttcgcaaggcagc
gagtttgagcaagtcgtggtgattctgccctcggacgagagcccgctggcgacacgcgag
ttgatctacaccggcatcacccgcgccaagagctgcgtccacgtctggggcgccgaggcc
accgtccgcaaagccctcgccgaccgcgccggccgctgcaccctgctcgagtccgcactg
agcggggccgaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (23)   
   Pfam (23)   
All databases (46)   

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