KEGG   Verrucomicrobia bacterium IMCC26134: IMCC26134_11395
Entry
IMCC26134_11395   CDS       T03830                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
vba  Verrucomicrobia bacterium IMCC26134
Pathway
vba03030  DNA replication
vba03410  Base excision repair
vba03420  Nucleotide excision repair
vba03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vba00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    IMCC26134_11395
   03410 Base excision repair
    IMCC26134_11395
   03420 Nucleotide excision repair
    IMCC26134_11395
   03430 Mismatch repair
    IMCC26134_11395
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vba03032]
    IMCC26134_11395
   03400 DNA repair and recombination proteins [BR:vba03400]
    IMCC26134_11395
Enzymes [BR:vba01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     IMCC26134_11395
DNA replication proteins [BR:vba03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     IMCC26134_11395
DNA repair and recombination proteins [BR:vba03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     IMCC26134_11395
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     IMCC26134_11395
   MMR (mismatch excision repair)
    DNA ligase
     IMCC26134_11395
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      IMCC26134_11395
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT BRCT_2 HHH Prot_ATP_ID_OB_C UPF0758_N zf-NADH-PPase
Other DBs
NCBI-ProteinID: AKC84099
UniProt: A0A0E3YYW3
Position
2996213..2998300
AA seq 695 aa
MARLRAEIAAQDERYYRHARPEITDFDYDRLKRALADLELAHPSAASAAGAASPTRRVGD
DRSEGFARVKHRFGMTTLDNTYDEGELRDFHARLVKALGTEDLAYTVEPKIDGVAVSLTY
ENGHFTRAVTRGDGEEGDDITANVRTIRALPALLSAPPPGDLFAAPAALPQLIEIRGEIF
LRDEEFRRINALQEEAGEAPYANPRNLAAGTVKLLDPALVATRKLEIVLYGLGACEPAPD
ARAEPDSDSPAASAGFDSQSGFQTRLRVWGLPVVEKFWAVRGIDAVLASIRELDALRRGF
AYPTDGAVVKLDAFARQRVVGYRGEGQAARKLSPRWACAYKFAPDRAETRILAITLQVGR
TGAVTPVAELEPILLAGTTVKRATLHNADEIARKDVRVGDTVLVEKAGEIIPAVIEVVLA
KRPAESTAYVFPADCPSCGTPLSREEGGVKWMCLNPLCPEKVRRRIEHFTSKACVDIDGL
GEEIVDLLLAKKIIRGVPDLFRLTREQLLPLKKSGELWAANLVNAIAARRTADLWRVIHG
LGIPQVGAAAAKDLARRFRSLEALAEASLNEIIQIDGFGEKTAESVLTWFNQPVNRVLVA
ELTAAGLAPTPPATGPAGGFFAGKTLVLTGTLPSLSREEAQALIEAAGGKVSSSVSKKTH
YVVAGEEAGSKLEKARALGVAVLDEAGLRALLAAG
NT seq 2088 nt   +upstreamnt  +downstreamnt
atcgcccgcctccgcgcggagatcgccgcccaagacgaacgctactaccgccacgcgcgt
cccgagatcaccgacttcgactacgaccggctcaaacgcgccctcgccgacctcgagctc
gcccacccctccgccgcttccgcagccggagcagcctcccctacccgccgcgtcggcgac
gaccgcagcgagggctttgcccgcgtgaaacatcgcttcggcatgaccaccctcgacaat
acctacgacgagggcgaactgcgcgattttcacgcccgtctggtcaaggcgctcggcacc
gaggacctcgcttacaccgtcgagcccaagatagacggcgtcgcagtcagcctcacctac
gaaaacggtcacttcacccgcgccgtcacccgtggcgacggtgaggaaggcgacgacatc
accgccaacgtccgcaccatccgcgccctgcccgccctgctctccgctccgcccccaggg
gacttgttcgccgcccccgcagcactccctcaactgatcgaaattcgcggtgaaattttc
ctgcgggacgaagagttccggcgcatcaacgctctccaggaagaagccggcgaagccccc
tacgccaacccgcgcaacctagccgccggcaccgtcaaactcctcgaccccgcgctcgtc
gccacccggaaactggaaatcgtgctctacggcctgggcgcctgcgaacccgcgcccgat
gccagagccgagcccgattccgactcccccgccgcctcggcgggcttcgattcgcaatcc
ggcttccagacccgcctgcgcgtctggggcctgccggtcgtggaaaaattctgggccgtg
cgcggcatcgacgccgtgctcgcctccattcgcgagctcgacgccctccgccgcggcttc
gcctacccgaccgacggcgcggtggtaaagctcgatgccttcgcccggcaacgtgtcgtc
ggctatcgcggcgaaggccaggcggctcgaaaactctcccctcgctgggcctgcgcctac
aaattcgcccccgatcgcgccgagacccgcatcctcgccatcacgctgcaagtcggccgc
accggcgccgtcacccccgtagccgagctcgaacccatcctgctcgccggcaccacggtc
aaacgcgccaccctccacaacgccgacgagatcgcccgcaaggacgttcgcgttggcgac
accgtgcttgtggaaaaggccggcgagatcatccccgctgtcatcgaagtagtgctcgcc
aagcgccccgcagagagcaccgcctacgtcttccccgcggattgtccctcctgcggcaca
ccgctctcgcgcgaagaggggggcgtcaaatggatgtgcctgaatccgctttgccccgaa
aaagttcgccgccgcatcgagcatttcacttccaaagcctgcgtcgatatcgacggcctc
ggcgaggagatcgtcgatctgttgctcgccaaaaaaatcatccgcggcgttccggatctc
ttccggctcacgcgtgaacagttgttgcccttgaaaaaatccggcgagctctgggcggcc
aatctggtgaacgccatcgccgcccgccgcaccgccgacctttggcgggtcattcacgga
ctgggcatcccgcaggtgggcgccgccgccgccaaggatctcgcgcgtcgcttccgctcc
ctcgaggcgctcgccgaagcctcgctcaacgagatcatccagatcgacggctttggcgaa
aaaaccgccgagtccgtgcttacttggttcaaccagcccgtcaaccgcgtgctcgtcgcg
gagctcaccgccgcgggtctcgcccctactcctcccgccaccggtcccgccggcggcttc
ttcgcaggcaaaaccctcgtcctcaccggcacacttccgtcgctcagccgcgaggaggcc
caggctctgatcgaggccgccggcggcaaggtcagcagcagcgtatccaaaaaaacccac
tacgtcgtcgccggcgaggaggccggttcgaagctcgaaaaagcccgcgccctcggcgta
gccgtgctcgacgaggccggcctgcgcgccttgctggcggcaggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (45)   

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