KEGG T05068: CKY39

Variovorax boronicumulans: CKY39_27795

Entry

CKY39_27795       CDS       T05068

Name

(GenBank) RNA-splicing ligase RtcB

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

vbo Variovorax boronicumulans

Brite

KEGG Orthology (KO) [BR:vbo00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:vbo03016]
    CKY39_27795
Enzymes [BR:vbo01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     CKY39_27795
Transfer RNA biogenesis [BR:vbo03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    CKY39_27795
Prokaryotic type
   tRNA splicing ligases
    CKY39_27795

SSDB

Motif

Pfam:

RtcB DUF4514

Other DBs

NCBI-ProteinID:

ATA56613

UniProt:

A0A250DRN6

Position

complement(5999293..6000513)

AA seq 406 aa
MTNYKLHEVANGVPVKMWTNGVPVEDEAQKQLENAARLPIVFKHIAAMPDVHYGIGATVG
SVIPTFKAIIPAAVGVDIGCGMMACKTTLNARDLPDNLGPLRSAIEKAVPHGSNPKRMGR
DKGSWETPPDETDAAWAKLVDEFDLICEDHPRIRNTNNHKHLGTLGTGNHFIEVCLDEAG
AVWFMLHSGSRGVGNAIGTHFIELAKKDAQLHQRNLPDQDLAYFEEGAQYFGDYVRAVGW
AQKFARANREVMMQRVVAAARKVITKPFEAHVEAVNCHHNYVSRETHFGQDVLVTRKGAV
SAKLGELGIIPGSMGAKSYIVRGKGNPESFMSCSHGAGRKMSRTKAKKLFTVADQIAATE
GVECRKDADVIDEIPMAYKDIDAVMEAQKDLVEVVYTLKQVVCVKG

NT seq 1221 nt +upstreamnt +downstreamnt
atgacgaactacaaactgcatgaagtcgccaacggcgtccccgtgaagatgtggaccaat
ggcgtgcccgtggaagacgaggcgcagaagcagctcgagaacgccgcgcgcctgcccatc
gtgttcaagcacatcgcggccatgcccgacgtgcactacggcatcggtgcgaccgtgggc
tcggtgatcccgaccttcaaggccatcatccccgccgccgtcggcgtggacatcggctgc
ggaatgatggcctgcaagaccacgctcaacgcacgcgacctgcccgacaacctgggcccg
ctgcgttcggcgatcgagaaggccgtgccgcatggaagcaaccccaagcgcatgggccgc
gacaagggttcatgggaaacgccgcccgacgaaaccgacgccgcctgggcgaagctggtg
gatgagttcgacctgatctgcgaggaccacccgcgcatcaggaacacgaacaaccacaag
cacctgggaacgctgggtaccggcaaccacttcatcgaggtgtgcctggacgaagcgggc
gccgtgtggttcatgctgcactcgggttcgcgcggggtgggtaacgccatcggcacgcac
ttcatcgaactcgcgaagaaggacgcgcagctgcaccagcgcaacctgcccgaccaggac
ctggcgtacttcgaggaaggcgcccagtacttcggcgactacgtgcgcgcggtgggctgg
gcccagaagttcgcacgggcgaaccgtgaagtgatgatgcagcgcgtggtcgcggccgcg
cgcaaggtcatcaccaagccgttcgaggcgcacgtggaagcggtgaactgccaccacaac
tacgtgagccgcgagacgcacttcgggcaggacgtgctcgtgacccgcaagggcgcggtg
agcgcgaagctcggcgagctggggatcatccccggcagcatgggcgccaagagctacatc
gtgcgcggcaagggcaaccccgagagcttcatgagctgcagccacggcgccggtcgaaag
atgagccgtacgaaggccaagaagctcttcaccgtcgccgaccagatcgctgcgaccgag
ggcgtggaatgccgcaaggacgccgacgtgatcgacgagatcccgatggcctacaaggac
atcgacgcggtgatggaggcgcagaaggacctggtggaggtggtttacacgctcaagcag
gtggtttgcgtgaagggttga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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