KEGG T03827: IR04

Vibrio cholerae O1 El Tor FJ147: IR04_00455

Entry

IR04_00455        CDS       T03827

Name

(GenBank) pseudouridine synthase

K06177

tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]

Organism

vcf Vibrio cholerae O1 El Tor FJ147

Brite

KEGG Orthology (KO) [BR:vcf00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vcf03009]
    IR04_00455
   03016 Transfer RNA biogenesis [BR:vcf03016]
    IR04_00455
Enzymes [BR:vcf01000]
5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.28  tRNA pseudouridine32 synthase
     IR04_00455
    5.4.99.29  23S rRNA pseudouridine746 synthase
     IR04_00455
Ribosome biogenesis [BR:vcf03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    IR04_00455
Transfer RNA biogenesis [BR:vcf03016]
Prokaryotic type
  tRNA modification factors
   Psudouridine synthases
    IR04_00455

SSDB

Motif

Pfam:

PseudoU_synth_2

Other DBs

NCBI-ProteinID:

AJZ97729

Position

II:complement(112691..114370)

AA seq 559 aa
MSALPDCFTRFTSVIAHIALPERFTFPFCYQPHPLSEIAADELQQHLLTQTDWYHPFGLT
ETDPQAHGKMFGVLVVQHRSGTLGYLAAFSGQLAEQNRLPGFVPPVFDRFADASFFRVDG
DQIAAINQQVREQETDPELAELASALKQSQLQAEHELSQRRILHNKQRHFRKQQRLQAEE
LPEKEKHTLLARLAEESVQQKRQLQCLKQEWEQRIAALQHRLDHKLMRIEQLKQQRKQRS
AALQKKLFSAYRFTNIRGVEKDLVELFSVTKNPLPPAGSGECAAPKLLHYAFQHQLRPIA
LAEFWWGRSPKSEIRQHKKFYPACQSKCQPILAHMLEGMPLEDNPLLSNPAQGQDITIVY
QDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQAEGVFALHRLDMSTSGLLVFALTR
RANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKVCWQQGKPALT
HWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYGLQDKRLFLHAEQL
SFAHPYTKQPMTFQVDADF

NT seq 1680 nt +upstreamnt +downstreamnt
atgtctgcactgcccgattgcttcactcgtttcacttctgtcatcgctcatatcgcgcta
cccgagcgctttacttttccattttgttatcagccacacccactgtctgaaattgcggcc
gatgagctacagcaacatttgctcactcaaaccgattggtatcacccttttggtttaacg
gaaaccgacccacaagctcacggcaaaatgtttggagtactggttgtgcagcatcgctct
ggaaccttgggttatttagcggcgttctctggtcaactggctgaacaaaatcggctgccg
ggatttgttcctcctgtgtttgatcgctttgctgatgcgtcttttttcagagtggatggc
gatcagattgcggccattaaccaacaagtgcgagagcaagaaactgatccggagcttgcg
gaactcgctagtgcccttaagcaatctcagttacaagccgagcatgagctgagccagcgg
cgtatattgcacaacaagcagcgtcactttcgaaaacagcagcgcttacaagcagaagag
ctaccagaaaaagaaaaacacactctgttggctcgcctagcggaagaaagtgtgcaacaa
aagcgtcagttacagtgcctcaaacaagagtgggaacagcgtattgcggctttacagcat
aggttagatcataaactcatgcgcattgagcaactgaaacagcaacgtaaacagcgctct
gcggcgctgcagaaaaaactgttctccgcctatcgttttaccaatatccgtggcgttgaa
aaggatttggttgagctattttccgtgaccaaaaatccgcttccacccgcaggttcaggc
gagtgcgcggctccaaaactattacactatgcgttccaacatcagctgcgacccattgca
ttggcagagttctggtgggggcgctcccccaaatcggaaattcgtcagcataagaagttc
tatcctgcatgtcagagtaaatgccaaccgattttggcgcacatgttagaagggatgccg
ctggaagataatccactgctcagcaatccggcgcaaggtcaagacatcaccattgtgtat
caagatgacgccatcgtagtggtcaataagcctgctgaatttctctctgtccccggtgtg
catgtgcatgattctgtgttgacgcgcttaaaggctcaatttacccaagcagaaggggta
tttgccctacatcgtctcgatatgtctacttctggacttttggtgtttgcgctgacgcga
cgtgctaacaaacagttgcaaaagcagtttatttctcgtgccgtccaaaagcgctatgtc
gcacttatcgaaggaaaattaagcgaaacacaaggtgagatccagttgcctttgtgtggc
gatctggatgatagaccaagacaaaaagtgtgctggcagcaaggtaagcctgcactcact
cattgggaaaccgtgcaagtggagcaaaaccgaactcgtgtttacctctacccacataca
ggacgtacccatcaattgcgagtacattgcgcccatcatcttggcttaaatgcgccgatt
gtcggtgacgatttgtatggcttgcaagacaaacgtttgtttttgcatgccgaacaactg
agttttgctcatccctacactaagcagcccatgactttccaagtcgatgcggatttttaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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