KEGG   Vibrio cholerae O1 El Tor N16961: VC_A0117
Entry
VC_A0117          CDS       T00034                                 
Name
(GenBank) sigma-54 dependent transcriptional regulator
  KO
K11908  sigma-54 dependent transcriptional regulator
Organism
vch  Vibrio cholerae O1 El Tor N16961
Brite
KEGG Orthology (KO) [BR:vch00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:vch03000]
    VC_A0117
Transcription factors [BR:vch03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    VC_A0117
SSDB
Motif
Pfam: Sigma54_activat Sigma54_activ_2 AAA_5 HTH_8 Mg_chelatase AAA_2 AAA_16 AAA DUF2381
Other DBs
NCBI-ProteinID: AAF96031
UniProt: Q9KN48
Position
II:128790..130382
AA seq 530 aa
MSQWLAFATQLVGVRKSHQLALQFVDLLTQGLDLSDSLLLLPSSDGRLLVPHDPQRQFAW
SVTDFDVPFAHVLQSSNAMHLTAEELVFWQSNRTFSQLTSRVGMFDSVWIQPLPMDTRQV
HSILLLMGESHGIVSAFENADFLKFIEVFSQQWSLLNDMEREEQRRLELKQSLTDIERDS
AQRSLANALSRTLIGESAAMQKLREQIVSAANSQLSVMVQGETGTGKELVAAAVHELSSR
KSAPFVAINCAAIPEHLLESELFGYCKGAFSGADSDKQGLIAQANGGTLFLDEIGDMPLT
LQAKLLRVLESRTFRPLGGKQELSSDFRLVSATHVNLLDQVRKKEFRQDLYYRLFQYPIT
LPRLAARLEDIELLSEHFVRVFNLQHNTRIRGLNYRAIDCLKQYDFPGNVRELKHLIEFG
CAQTADGTQVEASCFAHRLQTLPCLAPEATPVAVSVETENVDLEPSVALAGEPNFAVIHD
LKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEIKTP
NT seq 1593 nt   +upstreamnt  +downstreamnt
atgagtcaatggctggcgtttgcaacccaattggtgggagtaaggaagtcccaccagctt
gcgctgcaatttgttgatctgctgactcaaggcttagatctgagtgatagccttttgttg
ttgccatcgtcggatgggcgtttacttgtgcctcatgatccacagcgtcagttcgcgtgg
tcagtgacggattttgatgtgccttttgcccatgttttgcagtcatccaatgcgatgcat
ttgaccgcggaagagttggtattttggcaatccaatcgcacttttagccagttaacctct
cgcgtggggatgtttgattcggtatggatccaacccctgccgatggatactcgtcaagta
cactcgatcttgctgttgatgggcgagagtcacggtatcgtgagcgcttttgaaaacgcg
gactttttgaagtttatcgaggttttttcccagcaatggtcactgctcaacgatatggaa
cgtgaagagcagcgccgcttggagctgaaacaatcgctgacggatattgaacgcgactcg
gcgcagcgctcactggccaatgcgttatcgcgtactttgattggtgaaagcgctgcgatg
caaaagctgcgtgagcagattgtctctgccgctaactctcagctctcggtcatggtgcaa
ggtgaaactggcacggggaaagagttagtcgccgcggccgtgcatgaactttcgtcacgt
aagtctgcgccgtttgttgcgatcaactgtgcggcgatccctgagcatctactggaaagt
gaactgtttggttactgcaaaggggcattttctggagcggacagcgataaacagggactt
atcgcacaagcgaatggtggcacgctatttctggatgagatcggcgatatgccgctcacc
ttacaagccaaattattgcgtgtgcttgaatcgcgtacttttcgaccgctcggtggtaag
caggagctcagttccgatttccgtctggtatctgccacacacgtcaatctgctggatcaa
gtacgcaaaaaagaatttcgccaagatctctattaccgtctattccagtatccgatcacc
ttgccgcgtttggcggcacgcttggaagatattgagctgctcagtgagcactttgtgcgc
gtgttcaacttgcaacataacacgcgcattcgtggtttgaactatcgagccatcgactgc
cttaagcagtacgacttcccgggaaatgtgcgtgagctgaaacatttgattgagtttggc
tgcgcgcaaacagcggatggtacgcaggtggaagctagttgctttgcccatcgtttacaa
accctaccctgtcttgcgcctgaagcgacgccggtagccgtttctgtcgaaactgagaac
gtggatcttgaaccctcggttgcgctggctggagaaccgaattttgcggttatccatgat
ttgaaacaggcggtcagtcagtttgaagcgttgatcatcagtgagcgtttgaaccgcttt
gctggcgatcgcgcgaaagcggcgaaaagtctcggtatccctaagcgtaccttggcctac
aagtgcctgaaattggagatcaaaaccccatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (16)   

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