KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_107315
Entry
VOLCADRAFT_107315 CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VOLCADRAFT_107315
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcn03019]
    VOLCADRAFT_107315
   03041 Spliceosome [BR:vcn03041]
    VOLCADRAFT_107315
   03009 Ribosome biogenesis [BR:vcn03009]
    VOLCADRAFT_107315
   03016 Transfer RNA biogenesis [BR:vcn03016]
    VOLCADRAFT_107315
Enzymes [BR:vcn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     VOLCADRAFT_107315
Messenger RNA biogenesis [BR:vcn03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     VOLCADRAFT_107315
Spliceosome [BR:vcn03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    VOLCADRAFT_107315
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    VOLCADRAFT_107315
Ribosome biogenesis [BR:vcn03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    VOLCADRAFT_107315
Transfer RNA biogenesis [BR:vcn03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    VOLCADRAFT_107315
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk WD40 Helicase_C
Other DBs
NCBI-GeneID: 9619943
NCBI-ProteinID: XP_002956611
JGI: 107315
UniProt: D8UD65
Position
Unknown
AA seq 1484 aa
METPSCTVPLQAQPLDCAVSPSSGILAAALVTGHIQLASFSCPAHSPGGGSQLSYQLHVT
VPPPTPAPSVQPASKKKQKLTSGGASATAPDDAPSCRAVCFTSGGDTVLAGYADHAVRSY
DVATGRMVAGFSGEHDAQLSRVFALGPHVFASGDEEGLVALWDDRVGGSSGTTSSSSSSS
SSAIYRYTRHTDYISDFALHAKDQAVVVVSGDATLSVHDLRKRTALARSEDDNDDELLSC
VVVKGGRKVVAGTQSGVLQLYSWGYFNDCSDRLPGHPESVQALVAFDESTLLTGSSDGGV
RVVGVLPNRLLGILGQHNEDFPVERLALSNDRRVLASTSHDSAVKLWDLSVLLEDDGDED
DEGDEEDGDDGGVGAAATTVVAAPFKDNNLHAVNGMSPDTALGKRSASASADASNPGEGP
AAPPPAKAARLGGERVAQLPVGANLVEVDGKSCTHEVAWPPGQEGSTLPPPAREGAPARV
YPFKIDPFQQVAVNCLEAGHSVMVAAHTSAGKTVVAEYAFAMALRDKTRVVYTSPLKALS
NQKYRELAEEFVDVGLMTGDVTINPNASCLVMTTEILRSMLYRGSEVVREVQLVVYDEIH
YLRDKERGVVWEESIILAPRQARFVFLSATIPNAREFADWVAKTHRSPCHVVYTDYRPTP
LQHYLFPAGGDGLYMVVDERGVFREDNFQKAVGVLTETDAGGGKAKGGKNGGGGGSAPVG
GADSQKSDIFKLVRMIMERNYDPVIVFSFSKRECEALAAQMAPLELNSEDEKALDDQRLP
QITAMLPMLQRGVGVHHSGLLPIVKEVVEILFQEGLLKCLFATETFSTGLNMPAKTVVFT
NVKKYDGGVFRWITSGEYIQMSGRAGRRGLDDRGVVILMLDTRLEPPVAKEMIKGAPDTL
YSAFHLGYNMLLGLMRVEGAEPEQLMGASFRQFQVERSLPSLEARVSTLEAQRDAIVVPD
EQSVRQYYALLDQLASLRASLRGFLNSPQVCLPFLQPGRLVRLLPEPPETARPLPDFNEP
PGAGAVPSADGSGDASISGGAGGGEAVVAEVAYGVWGAVVNFERVGGKKDAAAAADGGGD
GGGGSKKSSKKSSSSSSGGAGHFIVDVLVNTAPTPGGGTAGGSSGTLPRGHPVKLLPPGD
KTGVPLVVTFSLAQVDRLSSVRIYLQRDLRPLDARKAACAALAEALVRLAGQRKSGGRVP
LLDPEDDMKVTDKAVRKTQSKIESVEGLLAAHPLATSLPAPELRSRLGALQRRSAAEEAV
AAARREAKAATSLILKDELKARQRVLRRLTYVDEDGVVTVKGRLAAGLSCGDELVLCELV
FAGAFNAMSLEALAAACSCFVFQEKGGEGGGPKLRDELVGALAAVKDAARRVAKVELDCK
MALDCGPHGGSASTTSLDDYVAKFRPDLMEPVAAWVRGVKFAELVKMTTVFEGSLVRAIR
RLEELLRQLAEALKGIGELALSERFEQTRERIKRDIIFAASLYL
NT seq 4455 nt   +upstreamnt  +downstreamnt
atggaaactccaagttgcacagtcccgcttcaagcacagccgctggactgcgctgtaagc
ccctccagcggcattctggctgccgccctcgtcaccggccacatccagctggcgtccttc
tcctgcccggctcatagccctggcggcggaagccaactgtcgtaccagctacatgtgacc
gtacccccgccaacgccagcgccatccgtacaacctgccagcaaaaaaaagcaaaagttg
accagcggcggagcctctgccacagcccctgatgacgcaccttcttgccgcgctgtctgc
ttcacaagcggcggcgacaccgtcctggcgggctatgccgaccacgccgtacggtcgtac
gacgttgcgacggggcgcatggttgcggggttctcgggcgagcacgatgcgcagctgagc
cgggtgtttgccctggggcctcatgtgttcgcgtctggggacgaggagggccttgtggct
ctgtgggacgatcgagttgggggcagcagcggaaccacgtcctcctcctcctcctcctcc
tcttccgcgatttaccgatacactcgccacactgactacatttcggacttcgcgctgcat
gccaaggaccaggcggttgtcgtcgtcagcggagacgccactctgtctgtacatgacctg
cgcaagcgtacggcactggctcgtagtgaggatgacaacgatgacgagctgttgagctgt
gtggtagtcaaggggggccgcaaggtggtggcgggcacccagtccggtgtactgcagttg
tacagctgggggtactttaacgactgcagtgacaggctcccgggccacccggagtcggtt
caggcgctggtggccttcgacgagtccaccttgttgacagggtcctcggacgggggggtg
cgtgtggtgggggtgctgccaaacagactgctgggaatactaggacaacacaacgaggac
ttccccgtcgagcgcctcgcactgtcgaacgaccgacgggtgcttgcctcgacctcccat
gactcggcggtcaaactctgggacttgtctgtactgctcgaggacgatggagatgaagac
gatgagggggatgaagaggatggggatgatggcggcgttggcgctgcagccaccaccgtg
gtggctgcgcctttcaaagataacaacttacacgccgtcaacggcatgtcgccggatacg
gctctcggcaagcggtccgccagtgcttccgccgatgcctcaaaccccggcgaaggcccg
gcagcaccacccccagcaaaggcggctcgtctaggcggtgaacgcgtagcccagctgcct
gtgggcgcaaacctggtggaggtggatggcaagtcctgcacgcacgaggttgcatggccg
ccaggccaggagggcagcacgctgccgccgccggcacgggagggggcccccgcgcgtgtc
taccccttcaaaattgatcctttccaacaagtggcagtcaactgtctggaagcaggccac
agcgtcatggtggcggcccacacctcggccggaaagacggtggtagcggagtatgccttt
gctatggccctgagggacaaaacccgcgtggtatacacctcccccttgaaggccctctcc
aaccagaagtaccgggagctggcggaggagtttgtggatgtggggctgatgacgggagac
gtcaccatcaatccgaatgcctcctgcctggtgatgaccacggaaattctgaggtccatg
ttgtacagggggtcagaggtcgtacgtgaagtacaactggttgtgtacgacgagatccat
tacctgcgtgataaggagcgtggcgtggtgtgggaggagtccatcatcctagcccccagg
caggctcgcttcgtatttctgtccgccaccatccccaacgcgcgcgagtttgctgactgg
gtggccaagacgcaccgttcgccctgccatgtggtgtacacggactacagacccacaccc
ctgcaacactacctcttcccggcgggtggtgatgggttgtacatggtggtggacgagcgg
ggcgtatttcgggaggacaacttccagaaagcggttggtgtactaaccgaaacggacgcc
ggcggcggaaaggccaagggcggcaagaacggcggcggtggcggctccgcgcctgtgggc
ggtgccgactctcagaaatctgatatcttcaagttggtccgaatgatcatggagcggaac
tacgacccggtcatcgtgttctccttctccaaacgcgaatgtgaggctcttgccgcccag
atggcccccctggagctcaacagcgaggatgagaaggcgctggacgaccagcgcctccct
cagatcaccgccatgttgcccatgctacagcggggggtgggggtgcaccactcggggcta
ctgcccatcgtgaaggaggtggtggagatcctgttccaggagggtcttctgaagtgttta
ttcgctacggagaccttctccaccggcctcaacatgcccgccaagacggttgtgttcacc
aacgtcaagaagtacgacggcggtgtgtttcgctggatcaccagcggggagtacattcag
atgagcggcagggcggggcgacgaggtctggatgatagaggtgttgtgatcctgatgttg
gacacccgactggagccccccgtggccaaggagatgatcaagggcgctccggacaccctc
tactcggccttccatctgggatacaacatgctgctgggccttatgcgggtggagggggcg
gaaccggagcagctcatgggggcatcgttcaggcagtttcaagtggagcggagtttgcca
tccctggaggcccgtgtatcgacactggaggcacagcgggatgccattgtcgtaccggac
gagcagtctgtacggcagtactatgcgttattggaccagctggcatcattgcgagccagc
ttacgggggttcctcaactcgccgcaggtgtgcctgcccttcctgcagccaggtcgcctg
gttaggctactcccggaaccacctgagacagctagaccgctgccggatttcaacgagccg
cccggggcgggtgccgtaccgtccgccgacggcagcggagacgcgtctattagcggcggc
gcgggcggtggggaggctgtggtggcggaggtggcgtacggtgtatggggcgctgtggtc
aatttcgagcgggtgggcggcaagaaggacgcggcggcggctgcagacggtggtggtgat
ggtggtggtgggtccaagaaatcctccaagaagagctcctcctcgtcctcggggggtgcg
ggccacttcattgtggacgtgttggtgaacacggcaccgaccccggggggcggtacggca
ggtggcagtagcggcactctgccccgaggtcaccctgtgaagctactgccccccggagac
aagacgggggtgccgctggtggtcacattttccctcgcgcaggtggaccggctcagcagt
gtgcgtatctacctgcaacgtgacctcagaccgctggacgcccggaaggccgcgtgtgcc
gccctggcggaggcgctggtgcggctggctggacagcgcaagagcgggggcagggtaccg
ttgctggacccggaggacgatatgaaggttaccgacaaggccgttcgcaagacccagtcc
aagattgagagtgtggaggggctgttggcggcccaccccctggccacctcccttccagca
cccgagctgagatcccggctgggggcgctgcagcggcggagcgccgcggaagaggcggtg
gcagcggcacggagggaggccaaggccgccaccagtctgatcctaaaagacgaactcaag
gcgcggcaacgggtgctgcgtcgtctgacctacgtggacgaggacggcgtggtgaccgtg
aagggccgtctggccgcggggctcagctgcggagatgagctggtgctgtgtgagctcgtg
ttcgcgggcgccttcaacgccatgagcttggaggcgctggccgccgcgtgttcgtgcttc
gtgttccaggagaagggaggggagggcggcgggccaaagctccgggatgagttggtgggt
gcgctggcggcggtcaaggacgcggctcgtcgtgttgccaaggtggagctggactgcaag
atggctctcgactgcggccctcatggcgggtccgcctccaccaccagtctggacgattac
gtcgccaagttccgacccgacctgatggagcccgtggcggcctgggtgcgtggtgtcaag
tttgcggagcttgtcaagatgaccaccgttttcgagggctccctggttcgggccattcgg
cgcctggaggagctgttgcggcagctggctgaggccctcaagggcatcggagagctcgcc
ctgtctgagaggttcgaacagaccagggagcgaatcaagcgagacatcatcttcgcggcg
tcgctgtacttgtag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (53)   
   KEGG ORTHOLOGY (1)   
   RefGene (47)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (70)   

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