KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_82170
Entry
VOLCADRAFT_82170  CDS       T01330                                 
Symbol
splh1
Name
(RefSeq) DEAH-box nuclear pre-mRNA splicing factor
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VOLCADRAFT_82170 (splh1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vcn03041]
    VOLCADRAFT_82170 (splh1)
Enzymes [BR:vcn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     VOLCADRAFT_82170 (splh1)
Spliceosome [BR:vcn03041]
 Complex C
  Other components
   Step II factors
    VOLCADRAFT_82170 (splh1)
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N DEAD
Other DBs
NCBI-GeneID: 9622310
NCBI-ProteinID: XP_002953292
JGI: 82170
UniProt: D8U3W7
Position
Unknown
AA seq 626 aa
MTVARRVAEEMGTKLGHKVGYAIRFEDVTSPSTSIKYMTDGLLLREALVDPLLSRYRIVI
IDEAHERTVHTDVLFGLLKGVQRTLFPYNSFCSGPAQCSLRSARPDFLRIKSARRGDDFR
LIVMSATLDAARFVDYFPGAVAALIRGRQFPVQVMYTAKPEDNYLDAAINATLQVHTDEG
EGDILVFLTGQDEIDSAERLLKVRNQGSKADPCRELLVLPIYAALPPEQQMKVFEPAPEG
QRKAILATNIAETSITIPGVRYVIDTGHVKARDYNAKLGLESLAVVPVSQAQARQRSGRA
GREGPGKAFRLYTESDFSSLAPVTPPEITRCNLGSVVLQLKAMGIQDVLGFDFMDPPPRA
AILRSLELLYALGALDSSGRLTEGVGSRLARLPVDPMFGRVLLAACEMGCGQEGVAVVAM
VSTDNVFHTPRAKEREWRAARLKFLAREGDHLTLLNVFRGFRELPKDSHKARTTWCSDNF
INIRAMRKAEDIYDQLVRFLGPPSPPGLGLALVSCGDDTAPLRRALTAGLFPHAARLQPD
GSYRVLATGRQVFLHPSSVLLDRKPDCLVFNELMHTTRTYARDAVAIEARWLPELAPAVF
AAKAGAAAASAAGTATGAAGGTPTRR
NT seq 1881 nt   +upstreamnt  +downstreamnt
atgacggtggctcgtcgcgtagcggaggagatgggtaccaagctggggcacaaggtgggg
tacgctatccgcttcgaggatgtgacctcgccctccaccagcatcaagtacatgacggac
gggttgctgctgagggaggccctggtggacccgttgttgagcaggtaccgcatcgtcatc
attgacgaggcacatgagcggacggtgcacaccgacgtgttgtttgggctgctcaagggg
gtgcagcgcacattgtttccttataattcattctgcagcggccctgcacaatgcagcctt
cggtcggcccggcctgattttctacgcatcaaatcggccaggcgcggtgacgacttccgt
cttattgtcatgtcggccacattggatgcagctcgctttgtggactacttccccggggcg
gtggcagcactgatacgcggccgacaattccctgtgcaggtgatgtatacagcaaagccg
gaggacaactacctcgacgccgcaatcaacgccacgctacaggtccacacagatgagggt
gagggggacattttggtcttccttaccgggcaagatgagatagactccgcggagaggctg
ctaaaggtcaggaaccaaggctccaaggcggacccctgccgggagctgctggtgctgccc
atatacgctgcattgccgcccgagcagcagatgaaggtatttgagcccgcacccgagggt
cagcgtaaagccatcctcgccaccaatatcgccgagacgtccattaccatccctggagtc
aggtacgtcattgacacgggccacgtcaaggcgcgtgactacaacgccaaattgggtcta
gagtctttggcggtggtgcccgtctcccaggctcaggcacggcagcgcagcgggcgggca
ggtcgcgagggccccgggaaggccttccggctgtacacggagtcggacttctcctccctg
gcgcccgtcacaccgcccgagatcaccaggtgtaacctggggagcgtcgtactgcagctc
aaagcgatgggcatccaggacgtacttgggttcgactttatggacccaccaccgcgagcg
gcaattctgagatccttagagttgttgtacgccctaggcgccctggactcctcgggtcgc
ctgactgagggcgtgggctcacggctggcgcgtctgcctgtggaccccatgtttggtcgg
gtgctgctggcggcttgcgagatggggtgcggtcaggagggggtggctgtcgtggccatg
gtatccacggataacgtattccacacgccaagggcaaaagagcgtgagtggcgagctgcg
cggctcaagttcctggcccgcgagggggaccacctcacattgttaaacgtgttccggggc
ttccgagagctacccaaggacagccataaagcccgaaccacttggtgctcagacaacttc
attaacatcagggcgatgcgcaaggccgaggacatttacgaccagctggttcgcttcctg
ggcccgccctcaccgccgggtctgggcctggccctggtgtcctgcggcgacgacaccgca
cctctccgacgggccctgactgctgggctgtttcctcatgccgccaggctgcaacccgat
gggtcctaccgagtgctggccaccgggcgtcaggtgttcctgcaccccagctccgtcctg
cttgatcgcaagcccgactgcttggtctttaacgagctcatgcacaccacccggacctac
gcacgagatgcagtggccatcgaggccagatggctgcccgagctggcgcctgctgtgttc
gcagccaaggctggcgcggcagccgccagcgccgctggcacagctactggggcagcgggc
ggaacgccaacccgaagatga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (28)   

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