KEGG   Vibrio coralliilyticus RE98: IX92_00590
Entry
IX92_00590        CDS       T03444                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
vcy  Vibrio coralliilyticus RE98
Pathway
vcy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vcy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IX92_00590
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcy03019]
    IX92_00590
   03400 DNA repair and recombination proteins [BR:vcy03400]
    IX92_00590
Enzymes [BR:vcy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     IX92_00590
Messenger RNA biogenesis [BR:vcy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     IX92_00590
DNA repair and recombination proteins [BR:vcy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      IX92_00590
SSDB
Motif
Pfam: RQC Helicase_C DEAD HRDC RecQ_Zn_bind ResIII zf-CXXC VMAP-M0
Other DBs
NCBI-ProteinID: AIW17643
UniProt: A0A7Y3Z0H6
Position
1:121516..123351
AA seq 611 aa
MTATLLAEQSDPSPTPQSVLEDVFGYQSFRDGQQEVIEAAVSGQDSLVIMPTGGGKSLCY
QVPALVRDGLTLVISPLISLMKDQVDQLKANGVAAECVNSSMPRDELISVYNRMQSGQLK
LVYVSPERVLMRDFIERLESLSLSMIAVDEAHCISQWGHDFRPEYASLGQIKQHFPHVPF
MALTATADDATRNDIMHRLQLNEPHIHLSSFDRPNIRYTLVEKHKPISQVIRFLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAASYHAGLEADERAYVQEAFQRDDIQIVVATVAFG
MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDD
GPQKQVEAHKLNAMSAFAEAQTCRRQVLLNYFGEYREQPCGNCDICLDPPKHFDATEQAR
KALSCVYRVNQSFGMGYVVEVLRGMQNIRIRENGHDKLTTYGIGRENSHDYWVSIFRQLI
HKGMLFQNITRNSTLQLTEEARPLLRGDTTLELAVPRLDTAARAAKSDKLTSKNYDKKLF
AKLRKLRKAIADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVNGVGQRKLEKYADPFL
DLIQEHITHHG
NT seq 1836 nt   +upstreamnt  +downstreamnt
atgaccgcgacactgcttgccgaacaatctgatccttcaccgactccacaaagcgtactg
gaggatgtgtttggttatcagtcgtttcgagatggccagcaagaagttattgaagcagcc
gtaagcggccaagacagcttggtcatcatgccaacgggtggcggtaaatcactctgttat
caggttcctgccttagtccgtgacggcttaacactggtgatttctcctctgatatcactg
atgaaagatcaggtcgatcagcttaaagccaatggtgttgcggcagagtgtgtcaactct
tccatgccccgtgatgagttgatttcggtctataaccggatgcagtcaggccagttgaag
ctagtgtatgtgtcacctgagcgcgtgctgatgcgtgattttatcgagcgtcttgaaagc
ttgtcgctttcaatgatcgccgttgacgaagcacactgtatttctcagtggggacatgat
ttcagacctgaatacgcgtcgctcggccagatcaaacaacactttcctcatgtgcctttt
atggcgctgacggcgacggccgatgatgcgacgcgcaatgacatcatgcatcgtctgcaa
ttgaacgagccgcatatccacctaagcagtttcgatcgccccaacatccgttacaccttg
gttgagaaacacaaaccaatttctcaggtgatccgttttctcgacacgcagaaaggcaac
tgcggcatcatctattgtggtagccgtaagaaagttgaaatggtgacggaaaaactgtgc
aacaaccatattcgtgccgccagttaccatgctggcttagaggcagacgagcgcgcttat
gtgcaagaagcatttcagcgtgatgatatccaaattgtggtcgccactgtggcatttggt
atggggatcaacaaacctaacgtgcgctttgtggttcactttgatattccacgcaacatt
gaatcctactatcaggaaaccggtcgcgcaggtcgggacggcttgcctgcggaagcgatg
atgctgtatgacccagcggacatcagctggctaaggcggatgttggatgaaaaagacgat
gggccacaaaagcaggttgaagcgcataagctcaatgcgatgagtgcttttgctgaagcg
cagacgtgccgccgtcaggtgttattgaattattttggtgagtaccgtgagcagccttgt
ggcaactgcgacatctgtttggatccgcccaagcactttgatgctactgagcaggcacgc
aaagcgttgtcttgtgtctaccgggttaatcagagctttggtatggggtatgtggttgaa
gtcctgcgcggaatgcagaatatccgcatccgtgaaaatggccacgacaagctcaccaca
tacggtatcgggcgtgaaaacagccacgactactgggtgagtattttccgtcagttgatc
cataaagggatgctgttccagaacattactcgcaactcgaccttacagcttactgaggaa
gcgcgcccactattgcggggagatacaactcttgaattagccgtgcctcgtctggatacc
gccgcaagagcggctaagtccgacaaactcaccagtaaaaactacgacaaaaagctgttt
gccaagttgcgtaagttacgcaaagcgattgccgatgaagatggcttaccaccgtacgtg
gtattcagtgatgccaccttgattgatatggcggaaattttgccaacctcttatggtgaa
atgctagcggtcaatggagtagggcaacgtaagttagagaaatacgcggatccattctta
gatttaattcaggagcacattactcatcatggttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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