KEGG   Vibrio fluvialis: AL536_21975
Entry
AL536_21975       CDS       T04379                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
vfl  Vibrio fluvialis
Pathway
vfl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vfl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AL536_21975
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vfl03019]
    AL536_21975
   03016 Transfer RNA biogenesis [BR:vfl03016]
    AL536_21975
Enzymes [BR:vfl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     AL536_21975
Messenger RNA biogenesis [BR:vfl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AL536_21975
Transfer RNA biogenesis [BR:vfl03016]
 Prokaryotic type
  tRNA degradation factors
   AL536_21975
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 RNase_II_C_S1 Rho_RNA_bind
Other DBs
NCBI-ProteinID: AMF96002
UniProt: A0A109X397
Position
2:3088167..3090614
AA seq 815 aa
MSDTTHVDPFADREADNYDNPIPSREYIIEFLTKANVPMNRNDLFEALELSGEDQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSTNKDNDILLPHH
QMRTIIHGDLVLVQPTGTDKRGRKEGRLVRVLEERQTQIVGRFFFEHGYSYVVPDDSRIH
QDILIPNELRGGARMGNVVVIEITDRGGRNRGMMGKVVEVLGENMAPGMETQIAIRTHQI
PHVWPQEVEQQIAGLGEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGW
RLWVAIADVSYYVRPNTALDKEATHRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTISEKGKLSGYKHYEAVMNSHARLTYTKVHDILEGDEELRVRYAELVPHLEELHRM
YKVLKDAREQRGAIEFETVETKFIFNAQRKIESIEPLERNDAHKLIEECMIMANIASASL
VEKAKEPSLYRIHEPPGEERLMGFRDFLGELGLDLGGGLEPSPTDYAHLMSQVGERPDKE
LIQTMLLRSMKQAVYNADNAGHFGLALQRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRN
QDRWTPTGGYHYSFDDMDYYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELDGVIA
NVTGFGFFVRLTELHIDGLVHISTLANDYYQFDPIGQRLIGESFGAIYRLGDAVKVKVLA
VNLDDRQIDFELVETSRKLRGEGKTAKKRAAEAKAKAKGKKEAATRGGKAVPLVEPTKRP
DNSGEAKGPKHKKTKAEKARKQKARSKADKARAKK
NT seq 2448 nt   +upstreamnt  +downstreamnt
atgtctgacaccacccatgttgatccttttgcggatcgcgaagctgataactatgacaac
ccaattccaagtcgcgaatacatcattgaatttctgactaaggccaatgtgccgatgaac
cgtaatgatttgttcgaagcgctggaactgtccggtgaagatcagtatgaaggtctgcgc
cgtcgtctgcgtgcgatggagcgtgatggccaactggtgtttacccgccgtcagtgttac
gcgctgccagagaaactggaaatggtgaaaggctatgtgattggtcataaggacggtcac
ggctgggtgcgcccggaaggcagcaccaacaaagataacgatattcttcttcctcatcat
cagatgcggactattatccacggcgacctggtactggttcagccaacgggtaccgataag
cgcggcagaaaagaggggcgtctggtccgcgtgctggaagagcgtcagacgcaaattgtc
ggccgtttcttctttgaacacggttactcttacgtcgtgccagatgattcgcgtattcat
caggatattctgatcccaaatgaactgcgtggcggtgcgcgcatggggaacgtggtggtg
attgagattaccgatcgtggcggtcgtaaccgcggcatgatgggtaaagtggtggaagtg
ctgggcgaaaacatggcgccgggcatggaaacccagattgcgattcgtactcaccagatc
ccgcatgtttggccacaagaagtggaacagcagattgctggtctgggtgaagaagtaccg
gaagaagccaaacagggccgcgtggatttgcgagctctgcctttggtgaccattgatggc
gaagacgcgcgcgacttcgatgacgcggtgtactgtgaagcgaagaaaggtggcggctgg
cgtttgtgggttgcgattgccgacgtgagttactacgtgcgtccgaacaccgctcttgat
aaagaagccacgcatcgtggtaactcggtgtacttcccatcacaagtggtgccaatgttg
ccggaagtcttgtcgaatggtttatgttcactcaacccgcaggtggatcgcctgtgtatg
gtgtgtgagatgaccatctccgagaaaggtaagctctctggttacaaacattacgaagcg
gtgatgaactctcatgcgcgtctgacctacaccaaagtgcacgacattctggaaggtgac
gaagagctgcgtgtgcgttatgccgaactggttccgcacctggaagagctgcatcgcatg
tacaaggtgctaaaagatgcccgtgaacaacgcggtgcgattgagttcgaaactgtagaa
accaaattcattttcaatgcgcaacgtaagattgaaagcattgaaccactggaacgtaac
gacgcacacaagctgatcgaagagtgcatgatcatggctaacattgcgtcagcgtctctg
gttgagaaggcgaaagagccttcgctataccgtattcacgagccgccgggtgaagagcgc
ctgatgggtttccgtgatttcctcggtgaactcggcctggatctgggcggcggtctggaa
ccgtcaccgaccgattacgcgcatctgatgagtcaggttggcgagcgcccggataaagaa
ctgattcagactatgttgctgcgctcaatgaagcaagcagtgtataacgcggacaatgca
ggtcactttggtctcgcgctgcaacgttatgcgcacttcacttcaccaatccgccgctac
ccggatttgctgctgcaccgtgcaatcaagtatttgattgccaaagaggaaggccgcaat
caggatcgctggacaccaacgggtggttatcattactcgtttgatgatatggattactac
ggtgagcagtgttcgatgaccgagcgccgcgctgatgatgcgactcgcgaagtgtctgat
tggctgaaatgtgagtacatgcaagatcacgttggtgaagagctcgacggtgtgattgct
aatgttacggggtttggcttcttcgttcgtctgacagagctgcacatcgatggtctggtg
cacatttctactctggccaacgattactatcagtttgacccgattggtcagcgcctgatt
ggcgaatcgtttggtgcgatttaccgtttgggcgacgctgtcaaagtcaaagtgctggca
gttaaccttgatgatcgccaaatagactttgaattagtcgaaacaagtcgtaagctacgc
ggcgaaggtaaaacggcgaagaaacgcgcggctgaggcgaaggctaaagccaaaggcaag
aaagaagcggcgacccgtggcggcaaagccgtacctttggttgaacccactaagcgcccg
gataattccggtgaagcgaaagggccaaaacacaaaaaaaccaaagcagaaaaagcgcgt
aagcaaaaagctcgcagtaaagccgacaaagcgcgagcgaaaaagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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