KEGG   Viruses: 2943107
Entry
2943107           CDS       T40000                                 
Symbol
TRSVs1gp1
Name
(RefSeq) Tobacco ringspot virus; RNA1 polyprotein
Virus
12282  Tobacco ringspot virus
SSDB
Motif
Pfam: RdRP_1 RNA_helicase DUF5957
Other DBs
NCBI-GeneID: 2943107
NCBI-ProteinID: NP_919040
RS: NC_005097
UniProt: Q88893
Position
NC_005097:101..7015
AA seq 2304 aa
MGFTCPNSDCLYSRSEWSNRALREEGLSFSMRCPGACCGAMLVRKQQEPEAVDQRHSPER
VRIAPHQNVCAGLPGVGPSKCPKHSQVPLAPKSKSVPARATVSASPLKKQHCDVVVTVGP
PADLELVYPALVSKGSANPPKVGKKSFNEALLEKRAAYQVRTAVPPPGPIRVVKTAATPV
KVEKVRFPKGAVAFNGANFIDAKGYVVLSAGALKILRGVQKLRRQQARSARRMAACRRVR
LAVFAARLPSLLRKADEATSGGFKYVDLNAPRVVRKAEKRPKKKPAKKAVRPASPVEEEI
NWDDFIIPESERTASPMKEEKPKRSLVPNSLGFGWWRPASGNLWDVVSQCQRACEGTFLE
ASAEACLVRAGVDDVALSVWARISKSVVQLSAYYDVNTLLENYTALSECTMDELQSVAVQ
LDSEYQELGPPTHFTCGLSNWARGAGKILYNFVAPTVEGIAGAGCRIVERAYELSKTVID
EIFSKMKSLFYDCFGNLFGHLNVLLSTIDSFWARASTWIMNILEKTHDCLKVLRDSAVWS
LLLILVGGLILLSERFLQSIGIISKPGTILGIFLATFLGIFGYTFFRKDDTLVSDLLCAF
KIAITNLFRTKPGPPGSPIIVDGDVVIPESAVAMSTCSFMGGLDIAIAAIGNVGASILGF
KVGALQYAAKIATCLDQLRKGKDVLKEMTCWIIETLGALWNKMTGREATFFDEVSAIVAV
DIREWLEESQNLCLAAQTFSIGDKIVLEQCERLIADGHKLLRGMGDADRKLSSSFLSTVQ
RKVSDLEKIHTQSVRAGYFEGRRMEPFWVYIHGPSHCGKSLLMEPMSRELLRAGGFSESS
IYTKNSCDKYWSRYRRQACVQIDDLSAGKTDPSLESQLINLVASKEVPLDMAEVEDKGIL
FDSAILVTSSNTAHVPTNANVNHAEAYKNRMNVVIQCRRKPEYSPMGMELEGTFQPFDPR
NPQASIECMLQHRETHAPITGWISAGAAMAEAVNQFRLHREKEMILQSNHLSSFRPAHPI
YTECATFLSMYARDASFVPPVDLGCKWEIPSGYMTIAAVDGRVFGFSQLGVCTEISKQMK
FTEEMEQYTLDKFAPDITKTMASQSRFKLVGAFLKGMIREEDNVVSLTSLGPKSTATQRE
FFETLGLAERVYLRAVQKKVNKIRTDPAFDVEALHARLLSTIATSYEYVRTYGPKIFPIL
MGFVCVVFACYGFIMPLLSFASGGSAVGGMVAMEQIAAASVVSSGSSPVAHRNRAPPVQP
RYARHRLAGASAEDAYAYEEMMVVLYVDSTVAPVVNAVRGPGRQFFNSHQALMIPNNSTV
VAHFSTRDVVEIHWEHDVVRKGEKKDTEIIQYRCPSIPELPSRCKKYFEYDLERDFPGPF
TLDASCYRMQSPGKIDIELVSWTDHDRELRTRPLVIADPFGEDRYRREIPQYIQYGRPDQ
LHDCGAICVAKIGGQHRIVGLVISTDKHNTGVGLLPSALHMTTCSLSYVPEEWEEAPRGL
KKLGWNDRSELPHMPRKTQYVAVNEDLAIPFDNPKIPSVLVSDDPRTVGTPVEGKDPVLV
AMEKFYEPMTDFTEEEVRPGQTEVSLFEQVCDDIVQTWFDAGAEFEDVEDDVVINGDDDF
DKLIMDTSEGYPYVLERTHGEKGKTRYFEGGPGAYTLKPGTSVYNDYHKLQEEVQVEGGI
PEMVCIECPKDELLVERKVLQKLGTRNFEILELPKNMLFRKKFLHWALFLSDMRWCLPCQ
VGIVVQGREWGLLMDRLAAKNSVAYNCDYSKFDGLMSCQVLDAIGKMVNKCYSNANPNLK
KKGKGELPGSPPQLARYNLLMSIFGRKCLARSQVFEVRGGIRRGALTVLLNSVFNEILIR
YVYKTVIPSPEFNRFETFVTLVVYGDDNLIAVDPSMQKIFTGEVIKKTLARKKITITDGS
DKLSPVLEAKPLAQLDFLKRSFLVSDSGQVMPALDRTCIYSSLLYLRSADCDPIPLLHQN
VQNALQELYYRQDREEFDNLRTFYLERLPMWRNGQHRLLDWNQCAEHWRARYTGCPSDNP
AGVLDMLVDPRCKSFMLPAGPANWSMPIADRIFVCGPKFSASGPSYTLCFNRLAAGETGV
QIKPVHAATQGAMPTAKFVESFRSIKKRPELELAISAYESGSNLYFKGCAPYNDIWACAI
SFCSAFGYAQKQVLLHMYDNCKRLGASSLRSYFNKSLVGDGCARRCEIHTTPAIAKQVER
LLPQVQCKHCEYDPEFASKPTTQLRKCTDPGVDGGKAMYIVRGLGRTAAKLVCSDICDGH
LMSCNTSFDKMVVNLFRRSCFKCL
NT seq 6915 nt   +upstreamnt  +downstreamnt
atgggctttacttgcccaaactctgattgtctctactcgcgtagcgagtggagcaatcgc
gccctccgcgaggagggtctttcttttagcatgcgttgtcctggcgcatgctgcggagca
atgttggtccgcaagcaacaggaacccgaagctgtggatcagcgccacagccccgaaaga
gtgcggatagcgccgcaccaaaatgtttgtgctggcttgccaggagtggggccttctaag
tgccccaaacattcccaggtgcctctggcaccaaaatccaaatctgtgcctgcaagggcc
acagtttctgcttctcctctcaagaagcagcactgtgacgttgtagtcactgttggccca
ccggccgacttggagctggtttatccagctcttgtttctaaggggtctgccaacccccct
aaggttggaaagaagagcttcaatgaagctcttcttgaaaagcgtgcagcctatcaggtt
cgcactgccgttccacctcctggtccaatccgggtggtgaagaccgctgccaccccggtc
aaggtggagaaggtgaggtttcctaagggagctgttgccttcaacggtgccaattttatt
gacgccaagggctacgtggtcctgagcgctggtgcgctcaaaattttgcgcggggttcaa
aaactccggcggcaacaggcgcgatctgcgcgtcgcatggctgcctgccgccgtgtgcgg
ctggcagtttttgctgctaggctgccttcgcttttgaggaaggcagatgaagccacatct
ggtggtttcaaatacgtagatctaaacgcaccgagggtggtgcggaaggccgaaaagcgg
ccgaagaagaaacccgccaagaaggcggtcaggcctgcctcccctgttgaggaggaaatt
aactgggatgattttatcattccagaatctgagaggactgcctccccgatgaaggaggaa
aaaccaaagcgctctttggtccccaattcattggggtttggctggtggcgcccagcctct
ggaaatctttgggatgttgtatcccaatgtcagcgtgcctgtgagggcacttttcttgaa
gcctctgctgaggcttgtctcgtgcgcgctggcgtagatgatgtggccctttctgtttgg
gcccgaatctcaaagagtgttgtgcaattatctgcatattatgatgtcaacacactgtta
gagaattatactgcactgtctgagtgcaccatggatgaattacaatctgtggcagtgcag
ttggattcagagtaccaggaacttggaccacccacacattttacctgtgggttatccaac
tgggctcgtggggcaggcaaaattctctataattttgtagcccctactgtggaagggata
gcaggcgcaggatgccgtattgttgagcgtgcctatgagttgtccaagaccgttattgat
gagattttcagcaaaatgaaatccctcttctacgactgttttggcaacttatttggccat
ttgaatgtgctgctatctacaattgatagtttttgggctcgcgcgtctacgtggataatg
aacattcttgaaaagacgcatgattgcttgaaagtgcttagggacagtgctgtctggtcc
ctattgttaattttagttggaggtttgatactcctttctgaaaggttcctacaatccatt
ggtataatttcaaagccaggaaccattttgggtatctttcttgcaacttttcttggcatc
tttgggtacactttctttcgtaaggacgatactttggtgtcagatcttttgtgtgccttc
aagatagccattacaaatcttttccggacaaagcctggtcctccagggtctcctatcatt
gtggacggtgatgtggtgataccggaaagtgctgttgcaatgtccacgtgcagttttatg
ggcggtcttgacattgcaattgctgctattggaaatgttggagcttccatccttggtttt
aaggttggagctcttcaatatgcagccaagatcgccacctgcttagaccagttgcgcaag
ggcaaggatgtgctcaaagagatgacctgttggatcattgaaacccttggcgccctatgg
aataaaatgactggtcgtgaagccactttctttgatgaagtctctgccattgtggcagtt
gacattagagagtggcttgaagagtctcaaaacctgtgcctcgcagcacaaactttctcc
atcggggataagattgttctcgaacagtgtgaacgtcttattgctgatggccataaactt
ttgcgaggcatgggtgatgctgatcggaagctttctagttcttttctttcaacggtgcaa
aggaaagtttctgatcttgagaaaatacatactcagtctgtccgtgctgggtattttgaa
ggaagaagaatggagcctttttgggtgtacattcacggaccctcccattgtggtaaatct
ctcttgatggaacctatgtctagggaattattaagagcgggaggcttttccgagtcgtct
atctacaccaagaattcttgtgataaatattggtctaggtatagaagacaggcttgtgtg
cagattgatgatttgtcagctggtaaaactgatccatctttagagagccagctcatcaat
ctcgttgcttcaaaagaggtgccattggatatggctgaggttgaggacaaaggtatactt
tttgactcagctattcttgtcacctcttccaacacagcccacgtgccaacaaatgcaaat
gtgaaccatgcggaagcttacaaaaaccgcatgaatgttgttatccaatgtaggaggaag
cctgagtactcccctatgggtatggaacttgaaggcacgttccaaccatttgatccacgg
aatccacaagcctcaatcgagtgcatgttgcagcatcgtgaaacgcatgcacctattact
ggttggatttctgctggagctgccatggctgaggcagttaaccaattccgcttgcacagg
gagaaagaaatgattttgcaaagtaatcatctttcttctttccgtcctgcgcatcccatt
tacactgagtgcgctactttcttgagcatgtacgcacgagacgcaagttttgtgccacca
gtggatcttggttgtaaatgggagattccaagtggatacatgaccatagctgctgtggat
ggtcgtgtttttggattttcacagcttggggtgtgtactgaaatctccaaacaaatgaaa
tttactgaggagatggaacagtacacccttgataaatttgccccagatattacgaagaca
atggcttcacaaagccgttttaaactcgttggggcttttttgaaaggaatgattagggag
gaagacaatgttgtttcgcttacctccctaggcccaaagagcactgcaactcaaagagaa
ttctttgaaactcttgggcttgctgagcgggtgtatctccgtgctgtacaaaagaaagtg
aataaaattcgcacggatcccgcatttgatgttgaggcgctgcatgctaggctactgagc
acaattgcaacttcctatgagtatgttaggacttatgggcctaaaattttccccatactc
atgggatttgtttgtgtagttttcgcatgctatggattcatcatgcccctgctttctttc
gcctcagggggttctgctgtaggtgggatggtcgcaatggaacagatagctgcggcttct
gtagtttcttctgggtcgagtccagttgcccaccgaaatcgtgcaccaccagtacaacca
aggtatgctaggcatcgtttagctggagcttcagccgaagatgcttatgcttatgaagaa
atgatggtggtgttgtacgttgattcaactgttgctccagttgtcaacgctgttagagga
cctggtcgtcaattttttaactcgcaccaggccctcatgattcccaacaatagcaccgtt
gtggctcatttttccacacgtgatgttgttgagattcattgggagcatgacgtcgtcagg
aaaggcgaaaagaaagacaccgaaattattcagtatcgctgtccttctattcctgaactc
ccctctcgctgtaagaaatattttgaatatgatttggagagggacttccctgggccattt
actttggatgccagctgttatagaatgcagagtccagggaagattgacatagagctggta
agttggactgaccatgatcgggaactccgcactcgccctttagttattgctgatccattt
ggcgaggatagatatagaagggagattccccagtacattcaatatggcagaccagatcaa
ctccatgattgtggtgctatctgtgtggccaaaattggaggtcaacatagaattgttggc
ttagtcatttccacagataaacacaatactggggttggattgttaccgtcggcgcttcat
atgacaacctgttccctttcctatgtgcctgaggaatgggaggaggcgccgcggggtttg
aagaaattgggttggaacgatcgttctgaacttccacatatgccgcggaaaacccaatat
gttgctgttaatgaggatcttgcgattccatttgataaccccaagataccaagtgtcttg
gtttcagatgatcctcgtactgtaggcacgcccgttgagggtaaagatcctgtcttggtt
gcaatggaaaaattttatgaaccaatgacagattttacagaagaggaagtccgcccaggt
caaactgaggttagtttatttgaacaagtttgtgatgacattgtgcaaacttggtttgat
gctggtgcggaatttgaggatgtggaggatgatgtcgtgatcaatggtgatgatgatttt
gataagctgatcatggacacatctgaaggttatccctatgtgcttgagagaacgcatggg
gaaaaaggaaaaacccgatattttgagggtggacctggggcttacactttaaagcctgga
acttctgtatacaacgattatcataaattacaggaagaagtccaggttgagggtggaatc
cctgaaatggtttgcatcgagtgccccaaagatgaattgcttgtggaacgtaaagttcta
caaaaattaggcactcgaaactttgaaatattggaattgcccaaaaacatgctttttaga
aagaaattcttacattgggctttgtttctctcagacatgcgatggtgcttgccgtgtcag
gtaggtattgtcgttcaggggcgtgaatgggggctcctgatggaccgtcttgctgcgaag
aattcggttgcatacaactgtgattattcaaagtttgatggcctcatgtcttgtcaggtg
ttggatgctataggaaaaatggtgaataaatgctattccaatgccaaccccaatttaaaa
aagaagggcaagggcgagctgcccggtagtcctccccaattagctaggtataatttgtta
atgtccatttttggtagaaagtgcctagctagatcccaagtttttgaagttcggggtggg
atccgtcggggtgcacttaccgttttattgaattctgtgtttaatgaaattctcatacgg
tatgtgtacaaaactgtaattccatcaccagagtttaaccgatttgaaacttttgtgact
ctggtggtttatggtgacgataacctcattgcagttgatccttcaatgcaaaagattttc
actggtgaggttattaagaaaacattggcaaggaagaagatcactattactgatggtagt
gataaattatcccctgtgcttgaggctaaaccccttgcgcagttggatttcttgaaacgt
tccttccttgtttctgattcagggcaggttatgccggcgctagatagaacttgtatatat
tcttctttgttgtatctgcgctcagctgattgcgacccaatacctctcttgcaccaaaac
gtgcaaaatgctctgcaagagttgtattaccgccaggatcgtgaagagtttgataatctt
cgaaccttttatctcgaaagattaccaatgtggcggaatggtcagcatcggttactggat
tggaaccaatgtgctgaacactggcgggctcgttatacaggatgtccttccgataatcct
gctggtgttttggatatgctggttgacccaaggtgtaaaagtttcatgctgccagctggt
cctgctaattggtctatgccgatagcagaccgcatttttgtctgtgggcccaagttttcc
gcaagtgggccctcatacaccttgtgtttcaatcgtcttgctgcaggtgagacaggcgta
caaataaagcctgttcacgctgcaactcaaggagctatgcctactgctaaatttgttgag
agtttccgctctataaagaagagacctgagcttgaattagccatctctgcttatgagagc
ggaagcaacctatattttaaaggttgtgctccttacaatgatatctgggcttgtgcgata
tctttttgttctgcttttggatatgcccagaaacaagtactcctccacatgtatgataat
tgtaagcgtttaggggctagttctttgaggagctacttcaataaaagcttggttggcgat
ggttgtgcacgtcgttgtgagattcacacgacgcctgctattgctaaacaagttgaacgc
cttcttccacaggttcaatgcaagcattgtgaatatgatcctgagtttgcatcaaaacct
actacccaattgcgtaaatgcacagatcctggtgtagatggaggcaaggcgatgtatata
gttcgtggcctaggtagaactgcagccaagctggtttgttcagatatatgtgatggacat
ttaatgtcttgtaacacttcatttgataaaatggttgtgaatctgtttaggcgatcttgt
tttaaatgcctttaa

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Genome (1)   
   KEGG GENOME (1)   
Gene (65)   
   RefGene (63)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
Taxonomy (1)   
   TAX (1)   
All databases (74)   

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