KEGG   Vibrio harveyi: AL538_10135
Entry
AL538_10135       CDS       T04380                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
vhr  Vibrio harveyi
Pathway
vhr03030  DNA replication
vhr03410  Base excision repair
vhr03420  Nucleotide excision repair
vhr03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vhr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AL538_10135
   03410 Base excision repair
    AL538_10135
   03420 Nucleotide excision repair
    AL538_10135
   03440 Homologous recombination
    AL538_10135
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vhr03032]
    AL538_10135
   03400 DNA repair and recombination proteins [BR:vhr03400]
    AL538_10135
Enzymes [BR:vhr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     AL538_10135
DNA replication proteins [BR:vhr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AL538_10135
DNA repair and recombination proteins [BR:vhr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     AL538_10135
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AL538_10135
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH_5 HHH
Other DBs
NCBI-ProteinID: AMF98030
UniProt: A0A454B752
Position
1:2132324..2135116
AA seq 930 aa
MASIPENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASDRIAV
VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT
LAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK
DNAMLSYELATIKLDVELEETPESLLKAEPSTDELIKLYGQLTFKSWLNELLEGGTGVVE
ADESTGAARGGSASSKADMDTSAVKIDRSQYETILDEASFNAWLDKLKASELFAFDTETD
SLDYMVANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWVLEQLKPILEDEAQAKVGQ
NLKYDASVLARYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGK
GKNQLTFNQIELDEASPYAAEDADVTLRLHNRLFANIEQDEKLKTVYEEIEMPLVPVLSR
IERTGVLIDDMKLSAQSVEIAARLDELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVI
KKTPSGTPSTNEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY
HQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLSG
DQALLDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGI
PRGEAQAYMDKYFERYPGVMQYMEDTRSAASEQGFVETIFGRRLHLPEIQSRNGMRRKAA
ERAAINAPMQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIES
KVQNLMESAAELKVPLVAEAGHGDNWDQAH
NT seq 2793 nt   +upstreamnt  +downstreamnt
atggcaagtattcctgaaaatccgttgattctgatcgacggttcttcttatctatatcgc
gcttttcacgcttacccaggcacgatgagtaacggtgaaattccaactaacgcagtttac
ggtgtagtcaacatgttacgcagcatgatgcgtcagtttgcttctgatcgtattgcagtg
gttttcgatgcgaagggtaaaaccttccgcgacgatatgtacccggaatacaaagcgaat
cgtccaccaatgccggacgatcttcgttgccagattgaacctctgcacaacgttattcgc
gctatgggtctgccattgatctgtattcctggcgtagaagccgatgatgtgattggtact
ctggcttatcaagcatcgcagcaaggcatgcctgttttgatcagtactggcgataaagat
atggcgcagttggtggatgacaacgttaccttgatcaacaccatgaccaacgttgtgatg
gatcgtgaaggtgtggttgagaagtttggtatcccaccagaattgatcatcgactaccta
gcgttgatgggcgataaagttgataacattcctggcgttccgggtgtgggtgataaaacc
gctactgctttgctacaaggcattggcggtctgactaagctgtatgaaaacctcgacgat
atcgctgcgcttggcttccgtggttcaaaaaccatggctaagaagctagtcgacaacaaa
gacaacgcaatgctgtcttacgagctagcgaccatcaagttggatgtggagctggaggag
acgccagaatcattgctaaaagcagaaccaagcacagatgaactgatcaaactgtacggt
cagttgacgtttaagtcttggttgaatgagctattagaaggcggcacaggtgtagtagaa
gcggatgaatcaaccggcgctgcgcgtgggggctctgcttcatctaaagcagatatggac
acttcagcagtaaaaatcgaccgtagccagtacgaaaccatcctagatgaagcttcattt
aatgcttggttagacaagctaaaagcgtctgaattatttgcgtttgatactgaaactgac
agcctagattacatggtggcaaacttggttggtttgtcatttgcaactgacgaaggcatt
gctgcttatgtaccagtggctcatgactacctagatgcgcctcagcagctggatcgtgat
tgggtactggaacagctgaagccgattcttgaagatgaggctcaggcgaaagtcggtcaa
aacctaaaatacgatgcgtctgtgttggctcgctacggcattgagatgaaaggcatcaag
cacgacaccatgttggcgtcttacgtctacaacagtgtaggcggcaaacatgatatggac
agcttggcactacgcttcctacagcacagctgcatttcattcgagcaaatcgcaggtaaa
ggtaaaaaccaactgaccttcaaccaaatcgaactggatgaagcttcaccatatgctgca
gaagatgcagacgtgacacttcgtctacataaccgtttgtttgccaacatcgaacaagat
gaaaagctaaaaaccgtatacgaagaaatcgaaatgccactcgtgccagtgctgtctcgc
attgagcgcactggtgtgttgattgatgacatgaagcttagcgcacaatcggtagagatt
gccgcacgtctggacgagcttgagcagaaagcttatgaaattgcagaacaagagttcaac
atgaattctccgaagcaactgcaagcacttctgtttgaaaaaatgggtctaccagttatc
aagaagacgccatcaggcacaccttctactaatgaagaagtgctgcaagagctggctctg
gattacccactaccaaaactgattttggaataccgtggtctggcgaagctaaaatcaacg
tacaccgacaaactacctaagatgatcaacccatcaacgggtcgtgtgcatacttcttac
caccaagcagtgactgcaacgggtcgtctatcttcaaccgatcctaacttgcagaacatc
ccaattcgtaatgaagaaggtcgtcgtattcgtcaggcattcgttgcacctacgggttat
aagattctggcagtcgactactctcagattgaattacgtattatggcgcacctatcaggt
gaccaagcgctgcttgatgcgttcagagacggcaaagatatccacgcggcaaccgcagca
gaaatcatgggcgtttctatcgaagacgtttcaagtgagcaacgtcgccgtgcgaaagcg
gttaacttcggtctaatctacggcatgagtgcgtttggtttggcgaagcaattgggtatt
cctcgtggtgaagcacaagcctacatggacaagtacttcgagcgctacccaggcgtgatg
cagtacatggaagacacgcgcagtgcggcttcagagcaaggcttcgtcgagactatcttt
ggtcgtcgtctacatcttcctgaaattcaatctcgtaacggcatgcgtcgtaaagcggca
gaacgcgcagcgatcaatgcaccgatgcaaggcaccgctgcggacatcatcaagaaagcg
atgttactggttgatcaatggattcaagaagaaggcaacggtcgagtgaaacttctgatg
caagtacacgatgaactggtgtttgaagttgaagagtcgtctttgtccgaaattgaaagt
aaagtacagaatttgatggagtctgcagcagagctgaaagtgcctctagtggcagaagca
ggtcacggtgacaactgggatcaagcacactag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (20)   

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