KEGG   Vibrio mimicus: AL543_12360
Entry
AL543_12360       CDS       T04381                                 
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
vmi  Vibrio mimicus
Pathway
vmi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vmi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AL543_12360 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vmi03019]
    AL543_12360 (pnp)
   03016 Transfer RNA biogenesis [BR:vmi03016]
    AL543_12360 (pnp)
Enzymes [BR:vmi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     AL543_12360 (pnp)
Messenger RNA biogenesis [BR:vmi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AL543_12360 (pnp)
Transfer RNA biogenesis [BR:vmi03016]
 Prokaryotic type
  tRNA degradation factors
   AL543_12360 (pnp)
SSDB
Motif
Pfam: RNase_PH PNPase RNase_PH_C S1 KH_1 KH_2 aRib SLS1_KH2 S1_2 DUF3016 Spt6_S1
Other DBs
NCBI-ProteinID: AMG03736
Position
2:1308555..1310684
AA seq 709 aa
MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVS
VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV
AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAEN
TELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVSAVLLAENEALDAKEIHTIFHD
LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ
RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVD
EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS
DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ
AISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA
TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV
EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSAEAAAEVAPQAE
NT seq 2130 nt   +upstreamnt  +downstreamnt
atgttcgaaaaaccagtagtaaaaacgtttcagtacggtaaccacaccgttactctagaa
accggtgttatggctcgccaagcaacggcagcagttatggcaaccatggacgacaccgcg
gtgtttgttagcgtcgttggtaagaaagaagccgttgttggtcaagatttcttccctctg
actgtaaactaccaagagcgtacttacgctgcaggtaaaatccctggtggtttctttaag
cgcgaaggtcgtccttctgaaggcgaaacgctgacagcacgtctgatcgaccgcccgatc
cgcccactgttcccagatggtttcactaacgaagtgcaagtgattgcgactgtagtttct
gttaacccagacgtacaacctgacatcatttcgatgatcggtacttctgcagcgctggcg
atttctggtcttccattcaatggcccaatcggtgcagctcgtgttggccacattgatggt
caactggttctgaacccaagtgaaaaagagctgaaacagtctcgtctggatctagtggtt
gcgggtactgacaacgcagttctgatggttgaatcagaagctcaaattctgactgaagaa
gagatgctggcagcggttgtgtttggtcacgatcaacaacaagccgttatcaatgcaatc
aacgaattcgcagcagaagttgcaacaccagcatgggaatgggttgctccagctgaaaac
actgagctgaaagcgaaggtggctgctctagcagaaacacgtctggttgaagcgtaccaa
atcactgaaaaaatggcgcgttatgatcgcatccatgaaatcagtgctgaagtgagcgcg
gttctgctggctgaaaacgaagcgttggatgcaaaagaaattcacacgattttccacgat
ctggaaaaaactgttgtacgtcgtagcatcatcgcgggtaacccacgtattgatggccgt
gaaaaagacatggttcgtgctcttgatgtacgtacaggcgttctgccacgtactcacggt
tcggcgctgttcacgcgcggtgaaactcaggctctggtaacagcaactctgggtactcaa
cgtgacgcacagatcatcgatgaactgactggcgagaagaaagaccacttcctactgcac
tacaacttccctccatactgtgtaggtgaaactggctttgtaggttctcctaagcgtcgc
gaaatcggtcacggccgtttggcgaagcgtggtatcgcggcagttatgccttcagtagac
gagttcccatacactgtacgtgtggtttctgagatcactgaatcgaacggctcatcttca
atggcttctgtgtgtggctcatctctagctctgatggatgcgggtgtaccaatcaaagct
tctgttgcgggtatcgcaatgggtcttgtgaaagaagaaaatgatttcgtcgttctgtct
gacattctgggtgatgaagaccacctgggcgacatggactttaaagtagcgggtaccgca
acaggtgttactgcactgcagatggacatcaagatcgaaggtatcaccaaagagatcatg
caaatcgcgctgaaccaagcaaaaggtgctcgtctgcacattctgtctgtgatggatcaa
gcgatctctgctgcacgtagtgatatctctgaatttgctccacgtatccacacgatgaaa
atcagtgtagataagatcaaagacgtgatcggtaaaggcggtgcggtaattcgtcagctg
actgaagaaacgggcactacgatcgagatcgaagatgacggtactatcaagatcgcagcc
actgacggtgatcaagcgaaagaagcgattcgtcgtattcaagaaatcactgcagaagtt
gaagtgggtgttatctacacgggtaaagttgctcgtctagcggacttcggtgcgtttgta
acgattcttcctggtaaagatggcctggtacacatctctcaaatcgctgacaagcgtgta
gagaaagtgtctgactacctgactgaaggtcaagaagttcaagttaaagtacttgaaatc
gaccgccaaggccgcgttcgtctaagtatgaaagaagcggttgaaacgtcagcagaagct
gcagctgaagttgcaccacaagcggaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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