KEGG   Virgibacillus necropolis: CFK40_09000
Entry
CFK40_09000       CDS       T04976                                 
Name
(GenBank) ATP-dependent RecD-like DNA helicase
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
vne  Virgibacillus necropolis
Pathway
vne03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vne00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    CFK40_09000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vne03400]
    CFK40_09000
Enzymes [BR:vne01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     CFK40_09000
DNA repair and recombination proteins [BR:vne03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     CFK40_09000
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 SH3_13 UvrD_C_2 Viral_helicase1 AAA_11 HHH_5 AAA_22 UvrD-helicase RsgA_GTPase T2SSE SLFN-g3_helicase Zeta_toxin nSTAND3 AAA AAA_12 AAA_18 AAA_17 AAA_28 DUF4926 NACHT TsaE AAA_16 AAA_29 DUF3244
Other DBs
NCBI-ProteinID: ASN05140
UniProt: A0A221MC02
Position
1926780..1929110
AA seq 776 aa
MEHTTQSRELDVQKYIKGELLYTIFHNATEHFSIAKIKVLDTNEQIQDKEIVVKGYFSNL
QEAKDYIFYGQMERHTKFGLQYQVTSYESDIPDTTDGLIAYLSSELFHGIGKKTASKIIE
HLGENAISQILINPDVLKDVQGLKPDKAELLVKTLQENEGFEHVVVYLAKFGIGLKLAQK
IYQVYKDQSIEMLQKDPYRYVFDVEGFGFQKADEIAGLNGLSLTHPNRIGAGCLFVMQKS
VQDGNVYLPVNECITNVIQLLGKTNTELDKETVKNQLESLNTDKTMIIQNANVYLPSLYY
AEDGFASHVKRLITKPMEHETPLAEMMKIIGDIEEAETLSYGKEQFHAINQSLHAKLMIV
TGGPGTGKTTVIKGIVDAYAAIHDVSIDPKDYEKKSDYPFVLTAPTGRAAKRLKESTGLP
AVTIHRLLGWDGNNGFDKDQNEPLSGKFLIVDEFSMVDIWLANSLFKAIPDDMQVLLVGD
EDQLPSVGPGQVLSDLLASQSIPLVSLNEVYRQKEGSKIIQLAHTIKNNECTTETLQNDK
DFSFLKCNEFHMIDVITKIFSHAEKKGIDLKDIQVLAPMYRSQAGITIINKTLQTIVNPK
TKTKREVKIYDTIFRVGDKVLQLVNQPEDGVSNGDIGEIVAIFFEDENKENVEQIVVTYE
GKEVVYEQKDYTNITHAYCISIHKSQGSEFPIVLLPVVSTYHRMLRKNLLYTAITRSKQS
LIICGEIQAFLRGVNTMDTNKRYTSLVNQLHERLPNKIEEVTEDITEGEISPYDFM
NT seq 2331 nt   +upstreamnt  +downstreamnt
atggaacacaccacgcaatcgagggaacttgatgtacaaaaatatattaaaggagagctt
ctgtacaccatttttcataatgctacagagcatttttcgattgcaaaaataaaagtgctt
gatacaaatgaacagatacaggataaagaaattgtcgtaaagggctatttttctaacctt
caggaagcaaaggactatattttttatgggcaaatggaacgacatactaagtttggtctt
caatatcaagttacttcttatgaatctgatataccagatactacagatggattaattgca
tatttatcgagtgaattatttcacggaattggtaaaaaaacagctagtaaaataattgag
catttaggtgaaaacgcgatatcacaaatactaataaatccagatgttttaaaagatgtt
caaggattgaaacctgataaggctgagctattagtaaaaacattacaagaaaatgaaggc
tttgagcatgtagttgtgtacttagcgaagttcggaattgggttaaagcttgctcagaaa
atatatcaagtctataaggaccaatcgattgaaatgcttcagaaggatccgtatcgatat
gtatttgatgtggaaggtttcggatttcaaaaagcggatgaaattgctggattaaatgga
ctatcactgacacatccgaaccgtataggtgcagggtgtctctttgttatgcaaaaaagc
gtgcaggatggcaatgtatacttgccagtaaacgaatgtataacaaacgttattcaatta
ttagggaaaactaatactgagttggataaggaaacggtcaaaaatcaactggaatcacta
aacacagataaaacgatgattatccagaatgctaacgtttatttaccttctttatattat
gcggaagatggatttgcttcacacgtgaagcgattgattaccaagcctatggaacacgag
acaccacttgcagaaatgatgaaaataattggcgatattgaagaggcggaaacattaagc
tatggaaaagaacaattccacgccattaatcaatcattgcacgctaaattaatgattgta
accggtggacctggaactgggaaaacgacagttataaaaggaatagtagatgcatatgca
gcaatccacgatgtttctattgacccaaaggattatgagaaaaagtctgattatccgttt
gttttgactgcaccaactggacgtgcggcaaaacgattaaaagaatcaactggactacca
gcagttactattcatcgattactcggttgggatggaaataatggatttgataaagatcaa
aacgagccattgtcaggtaagtttttaattgttgatgagttttctatggtagatatttgg
cttgcaaatagtttgtttaaagcaattcctgatgatatgcaagtcctattagttggtgat
gaggaccagcttccttctgtcggacctggccaggtactcagtgacttattagcaagtcaa
tcgattccattagtaagtctgaacgaagtgtatagacaaaaagaaggatccaaaattatt
caattagcccataccataaaaaataatgaatgtacaactgagacgcttcaaaacgataaa
gattttagcttcctaaaatgtaatgaatttcatatgattgatgtaattacaaaaatattc
tcgcatgcagaaaagaagggtattgatctgaaagatatacaggttttagcgccgatgtat
cgttcacaagcaggaataacgattattaataaaacactacaaacaattgtaaatccaaaa
acgaagaccaaacgtgaggtaaagatatatgacaccatattccgagtaggggataaagta
ctccaattggttaatcaaccggaagacggtgtttctaatggagatattggagaaattgta
gcaatcttttttgaggatgaaaataaggaaaatgtggaacagattgttgtgacgtatgaa
ggtaaagaagtagtttatgaacaaaaggattatacaaacataacacatgcttattgcatt
tccattcataaatcacaaggaagtgagtttccaattgtcctgttgcctgtagtatcaacc
tatcatcgaatgctacgtaaaaatctactatatacagctataacgagaagtaagcaatcc
ttaattatctgtggagaaatacaagcatttttgcgaggggtaaacaccatggatacaaac
aaaaggtatactagtctagtaaaccaattgcatgaacgattaccaaataaaatagaagaa
gtaacggaagacattacggaaggagagattagtccttacgattttatgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (26)   
   Pfam (26)   
All databases (36)   

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