KEGG   Vibrio nigripulchritudo: VIBNI_A2371
Entry
VIBNI_A2371       CDS       T02871                                 
Symbol
rne
Name
(GenBank) Ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
vni  Vibrio nigripulchritudo
Pathway
vni03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vni00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VIBNI_A2371 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vni03019]
    VIBNI_A2371 (rne)
   03009 Ribosome biogenesis [BR:vni03009]
    VIBNI_A2371 (rne)
Enzymes [BR:vni01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     VIBNI_A2371 (rne)
Messenger RNA biogenesis [BR:vni03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     VIBNI_A2371 (rne)
Ribosome biogenesis [BR:vni03009]
 Prokaryotic type
  rRNA processing factors
   VIBNI_A2371 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: CCO58439
UniProt: U4K708
Position
1:2518715..2521702
AA seq 995 aa
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAKDYFPEGYTYQGRPSIKEVLQEGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWSAIKEASDANAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA
KQHIQLVRPDFINRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLREAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLAL
SVLRLIEEEALKDNTSQVLAVVPVAIASYLLNEKRRSVNHIEKHQEVKITVVPNSDMETP
HFEVIRVRDGEEQDLLSYLVPKKLEAMKEAEAKESEEPSLKPKKIEEPALKGFAAPAQSA
PAPKPAPAKKPEVKKEEDAQPGLFGRIFKALGSFLFGSDEEEQKQEEKKEERTDNRRGNR
QRRDRKDQRENRRRNSRDNKNRNRRRDRDQEAEVSENDTKKAADSRKQNRKPRNEKRTKD
ENKNSKLAKEGQQLAADAQATAKPERKEKKAEQVKERRQRRNLKKQVRVKDQKAAEEANT
EQQLKQAAEVEAKKPETAGEEEETKQRRNRRSPRHLRASGQRRRRGRDRKPNPFRLRKGG
VASPEMAMGKVMPRYDLAKPKRRKDDKVEKKVELAAPVHGGYAFPEMAMGKVIIRREEVA
VEEKPVAAVQAPVVEATPVQNDVVASADKPEQEAASVAETVAPAVETKAEPEALIDSPVD
TNTVVETESALATEVKEPVQVSLAEESAEPIKVKVAHQVKSHVSAPMASAPGSTEMREIQ
VVAAPFRTERFQPIGAGAVAAKNRASAEMAKPDFS
NT seq 2988 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttaatcaacgcaactcaaaaagaagagttgcgtgtcgctttggtcgac
ggacagcgactttttgatctagatatcgagagtcctggtcacgaatccaaaaaagcgaat
atctacaaaggacgtatcactcgaatcgaacctagccttgaagctgcatttgtagactac
ggtgccgagagacacggtttcctccctcttaaagaaattgccaaagattactttcctgaa
ggttatacctaccaaggtcgtcctagcatcaaagaagtgctacaagaaggtcaagaagtt
attgttcaagtagaaaaagaagaacgcggcagcaaaggcgctgcgctgactactttcatt
tctcttgctggtagttacctggttcttatgcctaacaaccctcgtgctggcggtatttca
cgccgtatcgaaggtgatgagcgtacacaactgaaagcggcgttaagcactcttgaattg
cctcagggcatgggcttgatcgtacgtacagctggtgtaggcaaaagtgctgaagagcta
gagtgggacttaaatgtcctgcttaatcactggagcgcaattaaagaagcgtctgatgcc
aatgcagcccctttcctgattcatcaggaaagtaacgtcatcgtacgtgcaattcgtgac
tacttacgtcgtgacattggtgaaatcctgattgatagcaacaccatttatgagcgtgct
aaacagcacattcaattggttcgcccggacttcattaatcgagttaagaagtacgacggt
gaagtgccgctatttagtcactaccaaatcgaaagccaaatcgaatcagcattccagcgc
gaagttcgccttccgtctggtggttctattgtaatcgacccgacagaagcactgacgtct
atcgacatcaactcagcacgtgccactaagggtggtgacatcgaagagaccgcgctaaac
accaacctggaagcagctgatgaaattgcccgtcaacttcgtctacgcgacctgggtggt
ctggttgttatcgactttatcgatatgacgcctgttcgtcatcagcgtgaagttgaaaac
cgtctgcgtgaagccgttcgtttagaccgcgctcgcgttcagattggtcgaatctctcgc
tttggtcttctggaaatgtctcgtcagcgcttgagcccttctctggcagaagcaagccat
cacatttgtcctcgttgttctggcacaggtgtggttcgtgataatgaatcactggctctg
tccgttcttcgtctgattgaagaagaagcactaaaagacaacacatcccaagtactggct
gttgttcctgttgctattgcttcctaccttcttaacgaaaaacgtcgctcggttaaccac
atcgagaaacaccaggaagtgaagatcacggttgttcctaactcagatatggaaacgccg
cacttcgaagtaattcgtgttcgtgatggtgaagagcaagatctgctttcctacttggtt
ccaaagaaactggaagcgatgaaagaagcagaagcgaaagaatctgaagagccttctctg
aagcctaagaagattgaagagcctgctctgaaagggtttgctgcaccggcacaatctgct
ccggcaccgaaaccagcacctgctaaaaagcctgaagtgaagaaagaagaagatgctcaa
ccaggattgtttggtcgcattttcaaagctctgggtagcttcctgtttggctctgatgaa
gaagagcagaaacaagaagagaagaaagaagaaagaacggataatcgccgtggcaaccgc
cagcgtcgtgatcgcaaagaccagcgtgaaaaccgccgtcgtaactctcgtgataacaaa
aaccgtaatcgtcgccgcgatcgagatcaggaagctgaggtatctgaaaacgatactaag
aaagctgcagattctcgtaagcaaaaccgcaaacctcgtaacgagaaacgcaccaaagac
gagaacaagaactctaaactagcgaaagaaggtcagcagctagccgctgatgctcaagca
accgctaaaccagagagaaaagagaagaaagcggaacaggttaaagaacgtcgtcagcgt
cgtaaccttaagaaacaagttcgcgttaaagaccagaaagcggcagaagaagctaacacc
gaacagcaactaaaacaggctgctgaagtggaagcgaagaagccggaaacagcaggtgaa
gaagaggaaaccaagcaacgtcgtaaccgtcgttcacctcgtcatttgcgtgcgagtggt
cagcgtcgtcgccgtggtcgtgatcgcaagccgaacccgttccgtctacgtaaaggtggt
gtagcgtcaccagagatggcgatgggtaaagtcatgcctagatacgatcttgctaagcca
aaacgtcgtaaagacgacaaggttgagaagaaagttgaactggcagcaccagtacatggt
ggttacgcattcccagaaatggcaatgggcaaagtgatcattcgtcgtgaagaggttgca
gttgaagaaaaaccagtagcagctgttcaagcacctgtggttgaagcaactcctgttcag
aatgatgttgttgcatcagcagataagcctgaacaagaagcagcatcagtggctgaaact
gtagcaccagcagttgaaacaaaagcggagccagaagcactgatagattcgcctgtggat
acgaatactgttgtagagactgaatcagcactggcaactgaagttaaagaaccagtacaa
gtttctttagccgaagagtctgcagagccgattaaggtgaaagtcgcgcatcaggtgaag
tctcacgtttcagcgccaatggcaagtgcgccaggtagcactgagatgcgtgaaattcag
gtcgttgctgcacctttccgtacagaacgcttccagccaattggagccggagccgttgct
gcgaaaaaccgcgcttctgctgaaatggcaaagcctgatttcagctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

Download RDF
DBGET integrated database retrieval system